ENSG00000101343


Homo sapiens

Features
Gene ID: ENSG00000101343
  
Biological name :CRNKL1
  
Synonyms : CRNKL1 / crooked neck pre-mRNA splicing factor 1 / Q9BZJ0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: p11.23
Gene start: 20034368
Gene end: 20056046
  
Corresponding Affymetrix probe sets: 219913_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000366544
Ensembl peptide - ENSP00000428436
Ensembl peptide - ENSP00000429226
Ensembl peptide - ENSP00000440733
Ensembl peptide - ENSP00000366557
NCBI entrez gene - 51340     See in Manteia.
OMIM - 610952
RefSeq - NM_001278627
RefSeq - NM_001278625
RefSeq - NM_001278626
RefSeq - NM_001278628
RefSeq - NM_016652
RefSeq Peptide - NP_057736
RefSeq Peptide - NP_001265554
RefSeq Peptide - NP_001265555
RefSeq Peptide - NP_001265556
RefSeq Peptide - NP_001265557
swissprot - Q5JY65
swissprot - A0A0C4DGD7
swissprot - Q9BZJ0
Ensembl - ENSG00000101343
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 crnkl1ENSDARG00000007901Danio rerio
 CRNKL1ENSGALG00000008429Gallus gallus
 Crnkl1ENSMUSG00000001767Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IDA
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071012 catalytic step 1 spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA
 molecular_functionGO:0003723 RNA binding IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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