ENSDARG00000008383


Danio rerio

Features
Gene ID: ENSDARG00000008383
  
Biological name :arpc1a
  
Synonyms : actin related protein 2/3 complex, subunit 1A / arpc1a
  
Possible biological names infered from orthology : Q92747 / Q9R0Q6
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 40796110
Gene end: 40804455
  
Corresponding Affymetrix probe sets: Dr.3270.1.S1_at (Zebrafish Array)   NM_201343_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000005640
NCBI entrez gene - 394243     See in Manteia.
RefSeq - NM_201343
RefSeq Peptide - NP_958500
swissprot - Q7ZUQ0
ZFIN ID - ZDB-GENE-040116-1
Ensembl - ENSDARG00000008383
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARPC1AENSGALG00000004693Gallus gallus
 ARPC1AENSG00000241685Homo sapiens
 Arpc1aENSMUSG00000029621Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arpc1b / actin related protein 2/3 complex, subunit 1B / O15143* / Q9WV32*ENSDARG0000002706368
zgc:86896ENSDARG0000009036964


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017383  Actin-related protein 2/3 complex subunit 1
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030833 regulation of actin filament polymerization IEA
 biological_processGO:0034314 Arp2/3 complex-mediated actin nucleation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005885 Arp2/3 protein complex IBA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Regulation of actin dynamics for phagocytic cup formation
EPHB-mediated forward signaling
RHO GTPases Activate WASPs and WAVEs
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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