ENSDARG00000008542


Danio rerio

Features
Gene ID: ENSDARG00000008542
  
Biological name :yod1
  
Synonyms : Q567B1 / yod1 / YOD1 deubiquitinase
  
Possible biological names infered from orthology : Q5VVQ6 / Q8CB27
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 37708384
Gene end: 37720266
  
Corresponding Affymetrix probe sets: Dr.25493.1.A1_at (Zebrafish Array)   Dr.25493.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000112553
Ensembl peptide - ENSDARP00000003565
Ensembl peptide - ENSDARP00000143479
NCBI entrez gene - 550411     See in Manteia.
swissprot - E9QE45
swissprot - Q567B1
ZFIN ID - ZDB-GENE-050417-217
Ensembl - ENSDARG00000008542
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 YOD1ENSGALG00000037597Gallus gallus
 YOD1ENSG00000180667Homo sapiens
 Yod1ENSMUSG00000046404Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR003323  OTU domain
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006986 response to unfolded protein IEA
 biological_processGO:0016236 macroautophagy ISS
 biological_processGO:0016579 protein deubiquitination IBA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IBA
 biological_processGO:0030968 endoplasmic reticulum unfolded protein response ISS
 biological_processGO:0035523 protein K29-linked deubiquitination ISS
 biological_processGO:0035871 protein K11-linked deubiquitination ISS
 biological_processGO:0070536 protein K63-linked deubiquitination ISS
 biological_processGO:0071108 protein K48-linked deubiquitination ISS
 biological_processGO:1990167 protein K27-linked deubiquitination ISS
 biological_processGO:1990168 protein K33-linked deubiquitination ISS
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IBA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Ovarian tumor domain proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000112 gut gut immature , abnormal
Show

 ZFA:0000123 liver liver immature , abnormal
Show

 ZFA:0000135 notochord notochord malformed , abnormal
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 ZFA:0000155 somite somite fused with somite , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
Show

 ZFA:0001115 trunk trunk edematous , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curled , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020008 vcp / Q7ZU99 / valosin containing protein / P55072* / Q01853*  / reaction / complex






 

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