ENSDARG00000009764


Danio rerio

Features
Gene ID: ENSDARG00000009764
  
Biological name :srek1
  
Synonyms : splicing regulatory glutamine/lysine-rich protein 1 / srek1
  
Possible biological names infered from orthology : Q8BZX4 / Q8WXA9 / splicing regulatory glutamic acid and lysine rich protein 1
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 55160348
Gene end: 55201172
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000113861
NCBI entrez gene - 445219     See in Manteia.
RefSeq - NM_001003613
RefSeq - XM_021476086
RefSeq Peptide - NP_001003613
swissprot - A2BIN4
ZFIN ID - ZDB-GENE-040801-132
Ensembl - ENSDARG00000009764
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000043541Gallus gallus
 ENSGALG00000014775Gallus gallus
 SREK1ENSG00000153914Homo sapiens
 Srek1ENSMUSG00000032621Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srsf11 / serine/arginine-rich splicing factor 11 / Q05519* / serine and arginine rich splicing factor 11*ENSDARG0000009857437


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR033568  Splicing regulatory glutamine/lysine-rich protein 1
 IPR034192  SREK1, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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