ENSG00000153914


Homo sapiens

Features
Gene ID: ENSG00000153914
  
Biological name :SREK1
  
Synonyms : Q8WXA9 / splicing regulatory glutamic acid and lysine rich protein 1 / SREK1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q12.3
Gene start: 66139971
Gene end: 66183615
  
Corresponding Affymetrix probe sets: 1568783_at (Human Genome U133 Plus 2.0 Array)   212721_at (Human Genome U133 Plus 2.0 Array)   235611_at (Human Genome U133 Plus 2.0 Array)   238781_at (Human Genome U133 Plus 2.0 Array)   243361_at (Human Genome U133 Plus 2.0 Array)   244287_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000427935
Ensembl peptide - ENSP00000370305
Ensembl peptide - ENSP00000428272
Ensembl peptide - ENSP00000481430
Ensembl peptide - ENSP00000430894
Ensembl peptide - ENSP00000428970
Ensembl peptide - ENSP00000334538
NCBI entrez gene - 140890     See in Manteia.
OMIM - 609268
RefSeq - XM_017009056
RefSeq - NM_001077199
RefSeq - NM_001270492
RefSeq - NM_001323527
RefSeq - NM_001323529
RefSeq - NM_001323533
RefSeq - NM_001323534
RefSeq - NM_001323535
RefSeq - NM_139168
RefSeq - XM_011543171
RefSeq - XM_017009055
RefSeq Peptide - NP_001310456
RefSeq Peptide - NP_001310458
RefSeq Peptide - NP_001310462
RefSeq Peptide - NP_001310463
RefSeq Peptide - NP_001310464
RefSeq Peptide - NP_631907
RefSeq Peptide - NP_001070667
RefSeq Peptide - NP_001257421
swissprot - H0YC47
swissprot - A0A087WY03
swissprot - E5RK30
swissprot - E5RJ76
swissprot - E5RFV3
swissprot - Q8WXA9
Ensembl - ENSG00000153914
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srek1ENSDARG00000009764Danio rerio
 ENSGALG00000043541Gallus gallus
 Srek1ENSMUSG00000032621Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q05519 / SRSF11 / serine and arginine rich splicing factor 11ENSG0000011675438


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR033568  Splicing regulatory glutamine/lysine-rich protein 1
 IPR034192  SREK1, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0016607 nuclear speck IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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