ENSMUSG00000032621


Mus musculus

Features
Gene ID: ENSMUSG00000032621
  
Biological name :Srek1
  
Synonyms : Q8BZX4 / Splicing regulatory glutamine/lysine-rich protein 1 / Srek1
  
Possible biological names infered from orthology : Q8WXA9 / splicing regulatory glutamic acid and lysine rich protein 1
  
Species: Mus musculus
  
Chr. number: 13
Strand: -1
Band: D1
Gene start: 103739348
Gene end: 103774608
  
Corresponding Affymetrix probe sets: 10411839 (MoGene1.0st)   1427134_at (Mouse Genome 430 2.0 Array)   1427135_at (Mouse Genome 430 2.0 Array)   1427136_s_at (Mouse Genome 430 2.0 Array)   1457392_at (Mouse Genome 430 2.0 Array)   1458056_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000148039
Ensembl peptide - ENSMUSP00000074196
Ensembl peptide - ENSMUSP00000147737
Ensembl peptide - ENSMUSP00000147868
NCBI entrez gene - 218543     See in Manteia.
MGI - MGI:2145245
RefSeq - XM_017315498
RefSeq - XM_006517606
RefSeq - XM_006517607
RefSeq - XM_006517608
RefSeq - XM_017315497
RefSeq - NM_172592
RefSeq Peptide - NP_766180
swissprot - A0A1B0GSR3
swissprot - A0A1B0GSB4
swissprot - Q8BZX4
Ensembl - ENSMUSG00000032621
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srek1ENSDARG00000009764Danio rerio
 ENSGALG00000043541Gallus gallus
 SREK1ENSG00000153914Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Srsf11 / serine/arginine-rich splicing factor 11 / Q05519* / serine and arginine rich splicing factor 11*ENSMUSG0000005543632


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR033568  Splicing regulatory glutamine/lysine-rich protein 1
 IPR034192  SREK1, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0016607 nuclear speck ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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