ENSDARG00000009806


Danio rerio

Features
Gene ID: ENSDARG00000009806
  
Biological name :smfn
  
Synonyms : small fragment nuclease / smfn
  
Possible biological names infered from orthology : Mus musculus RNA exonuclease 2 (Rexo2), transcript variant 3, mRNA. / Q9D8S4 / Q9Y3B8 / REXO2 / RNA exonuclease 2
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 39893439
Gene end: 39905253
  
Corresponding Affymetrix probe sets: Dr.13752.1.S1_at (Zebrafish Array)   NM_200744_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000009619
NCBI entrez gene - 393717     See in Manteia.
RefSeq - NM_200744
RefSeq Peptide - NP_957038
swissprot - F1QNX9
ZFIN ID - ZDB-GENE-040426-1709
Ensembl - ENSDARG00000009806
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 REXO2ENSGALG00000035980Gallus gallus
 REXO2ENSG00000076043Homo sapiens
 Rexo2ENSMUSG00000032026Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR012337  Ribonuclease H-like superfamily
 IPR013520  Exonuclease, RNase T/DNA polymerase III
 IPR022894  Oligoribonuclease


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IBA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000175 3"-5"-exoribonuclease activity IBA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr