ENSDARG00000009864


Danio rerio

Features
Gene ID: ENSDARG00000009864
  
Biological name :ddx55
  
Synonyms : ddx55 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
  
Possible biological names infered from orthology : ATP-dependent RNA helicase DDX55 / DEAD-box helicase 55 / Q6ZPL9 / Q8NHQ9
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 3397871
Gene end: 3416258
  
Corresponding Affymetrix probe sets: Dr.16883.1.S1_at (Zebrafish Array)   NM_173229_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000020323
NCBI entrez gene - 286745     See in Manteia.
RefSeq - NM_173229
RefSeq Peptide - NP_775336
swissprot - F1QZG8
ZFIN ID - ZDB-GENE-021212-1
Ensembl - ENSDARG00000009864
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX55ENSGALG00000003298Gallus gallus
 DDX55ENSG00000111364Homo sapiens
 Ddx55ENSMUSG00000029389Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR025313  Domain of unknown function DUF4217
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
Show

 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton quality , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
Show

 ZFA:0001094 whole organism whole organism atrophied , abnormal
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 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage bent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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