ENSMUSG00000029389


Mus musculus

Features
Gene ID: ENSMUSG00000029389
  
Biological name :Ddx55
  
Synonyms : ATP-dependent RNA helicase DDX55 / Ddx55 / Q6ZPL9
  
Possible biological names infered from orthology : DEAD-box helicase 55 / Q8NHQ9
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: F
Gene start: 124552864
Gene end: 124569660
  
Corresponding Affymetrix probe sets: 10525751 (MoGene1.0st)   1439023_at (Mouse Genome 430 2.0 Array)   1447107_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000107065
Ensembl peptide - ENSMUSP00000143462
Ensembl peptide - ENSMUSP00000070279
NCBI entrez gene - 67848     See in Manteia.
MGI - MGI:1915098
RefSeq - NM_026409
RefSeq - NM_001190795
RefSeq Peptide - NP_001177724
RefSeq Peptide - NP_080685
swissprot - Q6ZPL9
swissprot - E9Q9T6
swissprot - A0A0G2JG82
Ensembl - ENSMUSG00000029389
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx55ENSDARG00000009864Danio rerio
 DDX55ENSGALG00000003298Gallus gallus
 DDX55ENSG00000111364Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR025313  Domain of unknown function DUF4217
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000410 waved hair "hair or fur having undulations or a sinusoidal shape" [J:47620]
Show

Allelic Composition: Cecr2tm2b(EUCOMM)Hmgu/Cecr2+
Genetic Background: C57BL/6N-Cecr2tm2b(EUCOMM)Hmgu/Tcp

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Dbn1tm1b(KOMP)Wtsi/Dbn1tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Dbn1tm1b(KOMP)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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