ENSDARG00000009950


Danio rerio

Features
Gene ID: ENSDARG00000009950
  
Biological name :edf1
  
Synonyms : edf1 / endothelial differentiation-related factor 1 / Q6PBY3
  
Possible biological names infered from orthology : O60869 / Q9JMG1
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 64397454
Gene end: 64406058
  
Corresponding Affymetrix probe sets: Dr.9707.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000026769
NCBI entrez gene - 793036     See in Manteia.
swissprot - A5PN46
swissprot - Q6PBY3
ZFIN ID - ZDB-GENE-040426-1710
Ensembl - ENSDARG00000009950
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EDF1ENSGALG00000038003Gallus gallus
 EDF1ENSG00000107223Homo sapiens
 Edf1ENSMUSG00000015092Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001387  Cro/C1-type helix-turn-helix domain
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR013729  Multiprotein bridging factor 1, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr