ENSGALG00000038003


Gallus gallus

Features
Gene ID: ENSGALG00000038003
  
Biological name :EDF1
  
Synonyms : EDF1 / Endothelial differentiation-related factor 1 homolog / Q5ZMC0
  
Possible biological names infered from orthology : endothelial differentiation related factor 1 / O60869 / Q9JMG1
  
Species: Gallus gallus
  
Chr. number: 17
Strand: 1
Band:
Gene start: 1040717
Gene end: 1043897
  
Corresponding Affymetrix probe sets: GgaAffx.11567.1.S1_at (Chicken Array)   GgaAffx.11567.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058327
NCBI entrez gene - 417286     See in Manteia.
RefSeq - NM_001006203
RefSeq Peptide - NP_001006203
swissprot - Q5ZMC0
Ensembl - ENSGALG00000038003
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 edf1ENSDARG00000009950Danio rerio
 EDF1ENSG00000107223Homo sapiens
 Edf1ENSMUSG00000015092Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001387  Cro/C1-type helix-turn-helix domain
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR013729  Multiprotein bridging factor 1, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043388 positive regulation of DNA binding IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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