ENSDARG00000010238


Danio rerio

Features
Gene ID: ENSDARG00000010238
  
Biological name :rbm22
  
Synonyms : Q6NZZ9 / rbm22 / RNA binding motif protein 22
  
Possible biological names infered from orthology : Pre-mRNA-splicing factor RBM22 / Q8BHS3 / Q9NW64
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 33211306
Gene end: 33229950
  
Corresponding Affymetrix probe sets: Dr.3283.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000004055
NCBI entrez gene - 406495     See in Manteia.
RefSeq - NM_213214
RefSeq Peptide - NP_998379
swissprot - Q6NZZ9
ZFIN ID - ZDB-GENE-040426-2298
Ensembl - ENSDARG00000010238
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM22ENSGALG00000004555Gallus gallus
 RBM22ENSG00000086589Homo sapiens
 Rbm22ENSMUSG00000024604Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0033120 positive regulation of RNA splicing ISS
 biological_processGO:0043009 chordate embryonic development IMP
 biological_processGO:0045292 mRNA cis splicing, via spliceosome ISS
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0071006 U2-type catalytic step 1 spliceosome IBA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0017070 U6 snRNA binding IBA
 molecular_functionGO:0036002 pre-mRNA binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
Show

 ZFA:0001114 head head flat , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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