ENSMUSG00000024604


Mus musculus

Features
Gene ID: ENSMUSG00000024604
  
Biological name :Rbm22
  
Synonyms : Pre-mRNA-splicing factor RBM22 / Q8BHS3 / Rbm22
  
Possible biological names infered from orthology : Q9NW64 / RNA binding motif protein 22
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: D3
Gene start: 60560736
Gene end: 60572810
  
Corresponding Affymetrix probe sets: 10455989 (MoGene1.0st)   1452675_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000025506
NCBI entrez gene - 66810     See in Manteia.
MGI - MGI:1914060
RefSeq - NM_025776
RefSeq Peptide - NP_080052
swissprot - Q8BHS3
Ensembl - ENSMUSG00000024604
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm22ENSDARG00000010238Danio rerio
 RBM22ENSGALG00000004555Gallus gallus
 RBM22ENSG00000086589Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR035979  RNA-binding domain superfamily
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000060 protein import into nucleus, translocation IEA
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0033120 positive regulation of RNA splicing IEA
 biological_processGO:0035690 cellular response to drug IEA
 biological_processGO:0042307 positive regulation of protein import into nucleus IEA
 biological_processGO:0045292 mRNA cis splicing, via spliceosome IEA
 biological_processGO:0046827 positive regulation of protein export from nucleus IEA
 biological_processGO:0090316 positive regulation of intracellular protein transport ISO
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0071006 U2-type catalytic step 1 spliceosome IBA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0017070 U6 snRNA binding IEA
 molecular_functionGO:0036002 pre-mRNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048306 calcium-dependent protein binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr