ENSG00000086589


Homo sapiens

Features
Gene ID: ENSG00000086589
  
Biological name :RBM22
  
Synonyms : Q9NW64 / RBM22 / RNA binding motif protein 22
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q33.1
Gene start: 150690794
Gene end: 150701107
  
Corresponding Affymetrix probe sets: 218134_s_at (Human Genome U133 Plus 2.0 Array)   222527_s_at (Human Genome U133 Plus 2.0 Array)   224068_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000199814
Ensembl peptide - ENSP00000430946
Ensembl peptide - ENSP00000428154
Ensembl peptide - ENSP00000412118
NCBI entrez gene - 55696     See in Manteia.
OMIM - 612430
RefSeq - NM_018047
RefSeq Peptide - NP_060517
swissprot - E5RJW4
swissprot - E5RHA8
swissprot - Q9NW64
Ensembl - ENSG00000086589
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm22ENSDARG00000010238Danio rerio
 RBM22ENSGALG00000004555Gallus gallus
 Rbm22ENSMUSG00000024604Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR035979  RNA-binding domain superfamily
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000060 protein import into nucleus, translocation IDA
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0033120 positive regulation of RNA splicing IDA
 biological_processGO:0035690 cellular response to drug IDA
 biological_processGO:0042307 positive regulation of protein import into nucleus IDA
 biological_processGO:0045292 mRNA cis splicing, via spliceosome IDA
 biological_processGO:0046827 positive regulation of protein export from nucleus IDA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0071006 U2-type catalytic step 1 spliceosome IBA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017070 U6 snRNA binding IDA
 molecular_functionGO:0036002 pre-mRNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048306 calcium-dependent protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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