ENSDARG00000010300


Danio rerio

Features
Gene ID: ENSDARG00000010300
  
Biological name :traf3ip1
  
Synonyms : TNF receptor-associated factor 3 interacting protein 1 / traf3ip1
  
Possible biological names infered from orthology : Q149C2 / Q8TDR0 / TRAF3 interacting protein 1
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 45605410
Gene end: 45667487
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000002437
Ensembl peptide - ENSDARP00000145260
Ensembl peptide - ENSDARP00000137079
Ensembl peptide - ENSDARP00000122130
NCBI entrez gene - 393572     See in Manteia.
RefSeq - NM_200600
RefSeq Peptide - NP_956894
swissprot - E9QHR4
swissprot - B0S7L7
swissprot - A0A0R4IR02
ZFIN ID - ZDB-GENE-040426-1146
Ensembl - ENSDARG00000010300
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRAF3IP1ENSGALG00000004236Gallus gallus
 Q8TDR0ENSG00000204104Homo sapiens
 Q149C2ENSMUSG00000034292Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR018799  TRAF3-interacting protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0008017 microtubule binding IEA


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000047 peripheral olfactory organ peripheral olfactory organ cilium decreased length , abnormal
Show

 ZFA:0000092 axis axis decreased length , abnormal
Show

 ZFA:0000107 eye eye quality , abnormal
eye degenerate , abnormal
eye movement quality , abnormal
eye ovate , abnormal
eye decreased size , abnormal
eye elliptic , abnormal
Show

 ZFA:0000114 heart heart morphology , abnormal
heart quality , abnormal
Show

 ZFA:0000123 liver liver morphology , abnormal
liver quality , abnormal
Show

 ZFA:0000130 olfactory pit olfactory pit cilium decreased amount , abnormal
Show

 ZFA:0000135 notochord notochord increased width , abnormal
Show

 ZFA:0000143 retinal photoreceptor layer retinal photoreceptor layer structure , abnormal
retinal photoreceptor layer apoptotic , abnormal
Show

 ZFA:0000150 pronephric duct pronephric duct cilium morphology , abnormal
pronephric duct cilium decreased amount , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
pronephros quality , abnormal
Show

 ZFA:0000152 retina retina central region apoptotic , abnormal
retina photoreceptor outer segment absent , abnormal
retina central region lacks all parts of type retinal cone cell , abnormal
retina photoreceptor outer segment decreased size , abnormal
retina photoreceptor outer segment disorganized , abnormal
retina electrical conductivity , abnormal
retina central region has fewer parts of type eye photoreceptor cell , abnormal
retina central region lacks all parts of type eye photoreceptor cell , abnormal
retina anatomical surface decreased area , abnormal
Show

 ZFA:0000155 somite somite decreased thickness , abnormal
somite elongated , abnormal
Show

 ZFA:0000282 sensory system sensory system quality , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0000678 hair cell anterior macula hair cell anterior macula cilium decreased length , abnormal
Show

 ZFA:0001094 whole organism whole organism shape , abnormal
whole organism curved ventral , abnormal
whole organism cilium morphology , abnormal
whole organism increased curvature , abnormal
whole organism anterior-posterior axis curled , abnormal
Show

 ZFA:0001115 trunk trunk curved , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
post-vent region curved , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0001464 retinal outer nuclear layer retinal outer nuclear layer wholeness , abnormal
Show

 ZFA:0001557 pronephric glomerulus pronephric glomerulus cystic , abnormal
Show

 ZFA:0001558 pronephric tubule pronephric tubule dilated , abnormal
Show

 ZFA:0009127 photoreceptor cell photoreceptor cell degenerate , abnormal
photoreceptor cell ciliary basal body mislocalised , abnormal
photoreceptor cell decreased amount , abnormal
Show

 ZFA:0009154 eye photoreceptor cell eye photoreceptor cell apoptotic , abnormal
eye photoreceptor cell nucleus condensed , abnormal
eye photoreceptor cell decreased amount , abnormal
Show

 ZFA:0009262 retinal cone cell retinal cone cell decreased amount , abnormal
retinal cone cell absence due to degeneration , abnormal
Show

 ZFA:0009275 retinal rod cell retinal rod cell decreased amount , abnormal
retinal rod cell absence due to degeneration , abnormal
Show

 ZFA:0009367 neuromast hair cell neuromast hair cell decreased amount , ameliorated
neuromast hair cell kinocilium absent , abnormal
neuromast hair cell import across plasma membrane process efficacy , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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