ENSG00000204104


Homo sapiens

Features
Gene ID: ENSG00000204104
  
Biological name :TRAF3IP1
  
Synonyms : Q8TDR0 / TRAF3 interacting protein 1 / TRAF3IP1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q37.3
Gene start: 238320441
Gene end: 238400900
  
Corresponding Affymetrix probe sets: 214458_at (Human Genome U133 Plus 2.0 Array)   238494_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000362424
Ensembl peptide - ENSP00000375851
Ensembl peptide - ENSP00000386648
NCBI entrez gene - 26146     See in Manteia.
OMIM - 607380
RefSeq - XM_017003789
RefSeq - NM_001139490
RefSeq - NM_015650
RefSeq - XM_011510945
RefSeq - XM_011510946
RefSeq - XM_011510947
RefSeq - XM_011510948
RefSeq - XM_006712414
RefSeq - XM_011510944
RefSeq Peptide - NP_001132962
RefSeq Peptide - NP_056465
swissprot - Q8TDR0
swissprot - H7BZ10
Ensembl - ENSG00000204104
  
Related genetic diseases (OMIM): 616629 - Senior-Loken syndrome 9, 616629
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 traf3ip1ENSDARG00000010300Danio rerio
 TRAF3IP1ENSGALG00000004236Gallus gallus
 Q149C2ENSMUSG00000034292Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR018799  TRAF3-interacting protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001738 morphogenesis of a polarized epithelium IEA
 biological_processGO:0001822 kidney development IMP
 biological_processGO:0001933 negative regulation of protein phosphorylation IMP
 biological_processGO:0021532 neural tube patterning IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0031076 embryonic camera-type eye development IEA
 biological_processGO:0031333 negative regulation of protein complex assembly IMP
 biological_processGO:0032480 negative regulation of type I interferon production IMP
 biological_processGO:0032688 negative regulation of interferon-beta production IEA
 biological_processGO:0035050 embryonic heart tube development IEA
 biological_processGO:0035735 intraciliary transport involved in cilium assembly TAS
 biological_processGO:0036342 post-anal tail morphogenesis IEA
 biological_processGO:0042073 intraciliary transport IBA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0050687 negative regulation of defense response to virus IMP
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0070507 regulation of microtubule cytoskeleton organization IEA
 biological_processGO:1901621 negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0005930 axoneme IEA
 cellular_componentGO:0030992 intraciliary transport particle B IEA
 cellular_componentGO:0035869 ciliary transition zone IDA
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097542 ciliary tip IDA
 cellular_componentGO:0097546 ciliary base IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008017 microtubule binding IEA


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000090 Nephronophthisis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000556 Retinal dystrophy 
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 HP:0000608 Macular degeneration 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001395 Hepatic fibrosis 
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 HP:0001396 Cholestasis 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001970 Tubulointerstitial nephritis 
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 HP:0002612 Congenital hepatic fibrosis 
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 HP:0003774 End stage renal disease 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008209 Premature ovarian failure 
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 HP:0008802 Hypoplastic femoral head 
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 HP:0010442 Polydactyly 
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 HP:0010579 Cone-shaped epiphyses 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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