ENSDARG00000011246


Danio rerio

Features
Gene ID: ENSDARG00000011246
  
Biological name :krr1
  
Synonyms : krr1 / KRR1, small subunit (SSU) processome component, homolog (yeast)
  
Possible biological names infered from orthology : KRR1, small subunit processome component homolog / Q13601 / Q8BGA5
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 2258935
Gene end: 2265271
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000104494
NCBI entrez gene - 724049     See in Manteia.
RefSeq - NM_001045325
RefSeq Peptide - NP_001038790
swissprot - F1R1V6
ZFIN ID - ZDB-GENE-060623-10
Ensembl - ENSDARG00000011246
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KRR1ENSGALG00000010227Gallus gallus
 KRR1ENSG00000111615Homo sapiens
 Krr1ENSMUSG00000063334Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR024166  Ribosomal RNA assembly KRR1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr