ENSDARG00000011582


Danio rerio

Features
Gene ID: ENSDARG00000011582
  
Biological name :sox5
  
Synonyms : sox5 / SRY (sex determining region Y)-box 5
  
Possible biological names infered from orthology : P35710 / P35711 / SRY-box 5
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 16982249
Gene end: 17055950
  
Corresponding Affymetrix probe sets: DrAffx.2.71.A1_at (Zebrafish Array)   NM_001033585_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000113921
Ensembl peptide - ENSDARP00000137633
NCBI entrez gene - 567413     See in Manteia.
RefSeq - NM_001033585
RefSeq Peptide - NP_001028757
swissprot - B3DJE0
swissprot - A0A0R4INR5
swissprot - Q5RH23
ZFIN ID - ZDB-GENE-000607-13
Ensembl - ENSDARG00000011582
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SOX5ENSGALG00000032768Gallus gallus
 SOX5ENSG00000134532Homo sapiens
 Sox5ENSMUSG00000041540Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sox6 / SRY (sex determining region Y)-box 6 / P35712* / P40645* / SRY-box 6*ENSDARG0000001553658
sox13 / SRY (sex determining region Y)-box 13 / Q9UN79* / Q04891* / SRY-box 13* / Transcription factor SOX-13 *ENSDARG0000003029734


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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