ENSDARG00000030297


Danio rerio

Features
Gene ID: ENSDARG00000030297
  
Biological name :sox13
  
Synonyms : sox13 / SRY (sex determining region Y)-box 13
  
Possible biological names infered from orthology : Q04891 / Q9UN79 / SRY-box 13 / Transcription factor SOX-13
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 37768298
Gene end: 37831776
  
Corresponding Affymetrix probe sets: Dr.10570.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000022977
Ensembl peptide - ENSDARP00000136233
swissprot - A0A0R4IMW9
swissprot - E7EZP3
ZFIN ID - ZDB-GENE-100519-1
Ensembl - ENSDARG00000030297
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SOX13ENSGALG00000000583Gallus gallus
 SOX13ENSG00000143842Homo sapiens
 Sox13ENSMUSG00000070643Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sox5 / SRY (sex determining region Y)-box 5 / P35710* / P35711* / SRY-box 5*ENSDARG0000001158243
sox6 / SRY (sex determining region Y)-box 6 / P35712* / P40645* / SRY-box 6*ENSDARG0000001553640


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR029547  Transcription factor SOX-13


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
Deactivation of the beta-catenin transactivating complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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