ENSGALG00000000583


Gallus gallus

Features
Gene ID: ENSGALG00000000583
  
Biological name :SOX13
  
Synonyms : SOX13 / SRY-box 13
  
Possible biological names infered from orthology : Q04891 / Q9UN79 / Transcription factor SOX-13
  
Species: Gallus gallus
  
Chr. number: 26
Strand: 1
Band:
Gene start: 1683809
Gene end: 1703852
  
Corresponding Affymetrix probe sets: Gga.10261.1.S1_at (Chicken Array)   Gga.7168.1.S1_at (Chicken Array)   GgaAffx.365.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000000812
NCBI entrez gene - 419820     See in Manteia.
RefSeq - XM_004934897
RefSeq - XM_015299130
RefSeq - XM_015299128
RefSeq - XM_015299129
swissprot - F1NJ38
Ensembl - ENSGALG00000000583
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox13ENSDARG00000030297Danio rerio
 SOX13ENSG00000143842Homo sapiens
 Sox13ENSMUSG00000070643Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX5 / transcription factor SOX-5 / P35711* / P35710* / SRY-box 5* / SRY (sex determining region Y)-box 5*ENSGALG0000003276838
SOX6 / Gallus gallus SRY-box 6 (SOX6), mRNA. / P40645* / P35712* / SRY-box 6* / SRY (sex determining region Y)-box 6*ENSGALG0000000607435
SOX30 / SRY-box 30 / O94993* / Q8CGW4* / Transcription factor SOX-30 *ENSGALG0000004586011


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR029547  Transcription factor SOX-13


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045586 regulation of gamma-delta T cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
Deactivation of the beta-catenin transactivating complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr