ENSG00000143842


Homo sapiens

Features
Gene ID: ENSG00000143842
  
Biological name :SOX13
  
Synonyms : Q9UN79 / SOX13 / SRY-box 13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q32.1
Gene start: 204073115
Gene end: 204127743
  
Corresponding Affymetrix probe sets: 1569111_at (Human Genome U133 Plus 2.0 Array)   209736_at (Human Genome U133 Plus 2.0 Array)   38918_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000434093
Ensembl peptide - ENSP00000478239
Ensembl peptide - ENSP00000436297
Ensembl peptide - ENSP00000356172
Ensembl peptide - ENSP00000433595
NCBI entrez gene - 9580     See in Manteia.
OMIM - 604748
RefSeq - NM_005686
RefSeq - XM_005245623
RefSeq Peptide - NP_005677
swissprot - H0YDQ5
swissprot - E9PPW0
swissprot - Q9UN79
swissprot - E9PKD6
Ensembl - ENSG00000143842
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox13ENSDARG00000030297Danio rerio
 SOX13ENSGALG00000000583Gallus gallus
 Sox13ENSMUSG00000070643Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX5 / P35711 / SRY-box 5ENSG0000013453247
SOX6 / P35712 / SRY-box 6ENSG0000011069343
SOX30 / O94993 / SRY-box 30ENSG0000003960017


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR029547  Transcription factor SOX-13
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0009653 anatomical structure morphogenesis TAS
 biological_processGO:0045586 regulation of gamma-delta T cell differentiation IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding ISS


Pathways (from Reactome)
Pathway description
Deactivation of the beta-catenin transactivating complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000148737 Q9NQB0 / TCF7L2 / transcription factor 7 like 2  / reaction / complex
 ENSG00000168036 CTNNB1 / P35222 / catenin beta 1  / reaction / complex
 ENSG00000138795 LEF1 / Q9UJU2 / lymphoid enhancer binding factor 1  / reaction / complex






 

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