ENSG00000134532


Homo sapiens

Features
Gene ID: ENSG00000134532
  
Biological name :SOX5
  
Synonyms : P35711 / SOX5 / SRY-box 5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: p12.1
Gene start: 23529500
Gene end: 24562544
  
Corresponding Affymetrix probe sets: 1569638_at (Human Genome U133 Plus 2.0 Array)   207336_at (Human Genome U133 Plus 2.0 Array)   238009_at (Human Genome U133 Plus 2.0 Array)   238285_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494627
Ensembl peptide - ENSP00000493866
Ensembl peptide - ENSP00000496161
Ensembl peptide - ENSP00000356174
Ensembl peptide - ENSP00000370788
Ensembl peptide - ENSP00000379328
Ensembl peptide - ENSP00000393240
Ensembl peptide - ENSP00000398273
Ensembl peptide - ENSP00000437487
Ensembl peptide - ENSP00000439832
Ensembl peptide - ENSP00000441579
Ensembl peptide - ENSP00000441973
Ensembl peptide - ENSP00000442119
Ensembl peptide - ENSP00000443520
NCBI entrez gene - 6660     See in Manteia.
OMIM - 604975
RefSeq - XM_017019903
RefSeq - XM_017019889
RefSeq - XM_017019890
RefSeq - XM_017019891
RefSeq - XM_017019892
RefSeq - XM_017019893
RefSeq - XM_017019894
RefSeq - XM_017019895
RefSeq - XM_017019896
RefSeq - XM_017019897
RefSeq - XM_017019898
RefSeq - XM_017019899
RefSeq - XM_017019900
RefSeq - XM_017019901
RefSeq - XM_017019902
RefSeq - NM_001261414
RefSeq - NM_001261415
RefSeq - NM_001330785
RefSeq - NM_006940
RefSeq - NM_152989
RefSeq - NM_178010
RefSeq - XM_011520831
RefSeq - XM_011520832
RefSeq - XM_011520833
RefSeq - XM_011520834
RefSeq - XM_011520835
RefSeq - XM_011520837
RefSeq - XM_011520838
RefSeq - XM_011520842
RefSeq - XM_017019888
RefSeq Peptide - NP_001317714
RefSeq Peptide - NP_008871
RefSeq Peptide - NP_694534
RefSeq Peptide - NP_821078
RefSeq Peptide - NP_001248343
RefSeq Peptide - NP_001248344
swissprot - A0A024RB06
swissprot - F5GWL1
swissprot - P35711
swissprot - F5H0I3
swissprot - F5H876
swissprot - G3V0H1
swissprot - I3L0A5
swissprot - T2CYZ2
Ensembl - ENSG00000134532
  
Related genetic diseases (OMIM): 616803 - Lamb-Shaffer syndrome, 616803

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox5ENSDARG00000011582Danio rerio
 SOX5ENSGALG00000032768Gallus gallus
 Sox5ENSMUSG00000041540Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX6 / P35712 / SRY-box 6ENSG0000011069361
SOX13 / Q9UN79 / SRY-box 13ENSG0000014384239
SOX30 / O94993 / SRY-box 30ENSG0000003960016


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0032332 positive regulation of chondrocyte differentiation IDA
 biological_processGO:0055059 asymmetric neuroblast division IGI
 biological_processGO:0061036 positive regulation of cartilage development IDA
 biological_processGO:0071560 cellular response to transforming growth factor beta stimulus IDA
 biological_processGO:2000741 positive regulation of mesenchymal stem cell differentiation IDA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000078 Abnormality of the genital tract 
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 HP:0000189 Narrow palate "Width of the palate more than 2 SD below the mean (objective) or apparently decreased palatal width (subjective)." [pmid:19125428]
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 HP:0000194 Open mouth 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000324 Facial asymmetry 
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000414 Bulbous nose 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000545 Myopia 
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 HP:0000577 Exotropia 
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 HP:0000648 Optic atrophy 
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 HP:0000678 Dental overcrowding 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000739 Anxiety 
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 HP:0000750 Impaired language development 
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001653 Mitral regurgitation "An `abnormality of the mitral valve` (HP:0001633) characterized by insufficiency or incompetence of the mitral valve resulting in retrograde leaking of blood through the mitral valve upon ventricular contraction." [HPO:probinson]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001845 Overriding toes "A congenital condition in which a toe is adducted, dorsifelxed, and medially deviated, generally lying over the metatarsal phalangeal joint of the adjacent toe. Usually, the fifth toe is affected." [HPO:curators]
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 HP:0001847 Increased length of the hallux "Increased length of the big toe." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002711 Exaggerated median tongue furrow "Increased depth of the median tongue furrow." [HPO:curators]
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002948 Vertebral fusion "A developmental defect leading to the union of two adjacent vertebrae." [HPO:curators]
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 HP:0003316 Butterfly vertebrae 
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 HP:0003812 Phenotypic variability 
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005659 Thoracic kyphoscoliosis 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0008428 Vertebral clefts 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012443 Abnormality of the brain "An abnormality of the `brain` (FMA:50801), which has as its parts the forebrain, midbrain, and hindbrain." [HPO:probinson]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0100716 Autoagression "Aggression towards oneself." [HPO:sdoelken]
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 HP:0100807 Long fingers "The middle finger is more than 2 SD above the mean for newborns 27 to 41 weeks EGA or above the 97th centile for children from birth to 16 years of age AND the five digits retain their normal length proportions relative to each other (i.e., it is not the case that the middle finger is the only lengthened digit), or, Fingers that appear disproportionately long compared to the palm of the hand." [pmid:19125433]
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 HP:0430028 Hyperplasia of the maxilla "Abnormally increased dimension of the maxilla, especially relative to the mandible, resulting in a malocclusion or malalignment between the upper and lower teeth or in anterior positioning of the nasal base, increased convexity of the face, increased nasolabial angle, or increased width (transverse dimension of the maxilla." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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