ENSDARG00000011611


Danio rerio

Features
Gene ID: ENSDARG00000011611
  
Biological name :actr1
  
Synonyms : actr1 / ARP1 actin related protein 1, centractin
  
Possible biological names infered from orthology : ACTR1B / ARP1 actin related protein 1 homolog B / Beta-centractin / P42025 / Q8R5C5
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 42521943
Gene end: 42540839
  
Corresponding Affymetrix probe sets: Dr.5468.1.S1_at (Zebrafish Array)   NM_213372_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000015781
Ensembl peptide - ENSDARP00000069787
NCBI entrez gene - 406681     See in Manteia.
RefSeq - NM_213372
RefSeq Peptide - NP_998537
swissprot - Q4V943
swissprot - Q7ZUZ2
ZFIN ID - ZDB-GENE-040426-2695
Ensembl - ENSDARG00000011611
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ACTR1BENSG00000115073Homo sapiens
 Actr1bENSMUSG00000037351Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
actc1c / actin, alpha, cardiac muscle 1c / ACTG2* / P63268* / P63267* / Actin, gamma-enteric smooth muscle * / actin, gamma 2, smooth muscle, enteric*ENSDARG0000007911154
acta2 / actin, alpha 2, smooth muscle, aorta / P62736* / P62737* / Actin, aortic smooth muscle Actin, aortic smooth muscle, intermediate form*ENSDARG0000004518053
actc1a / actin, alpha, cardiac muscle 1a / ACTC1* / P68032* / P68033* / actin, alpha, cardiac muscle 1*ENSDARG0000004253553
acta2 / actc1b / actin, alpha, cardiac muscle 1b / ACTC1* / P68032* / actin, alpha, cardiac muscle 1*ENSDARG0000009919753
actc1a / actin, alpha, cardiac muscle 1a / ACTC1* / P68032* / P68033* / actin, alpha, cardiac muscle 1*ENSDARG0000007612653
actb1 / Q7ZVI7 / actin, beta 1 / ACTB* / ACTG1* / POTEJ* / P60709* / P0CG39* / P60710* / P63260* / P63261* / actin beta* / actin gamma 1* / POTE ankyrin domain family member J* / Actin, cyt...ENSDARG0000003774653
acta1a / actin, alpha 1a, skeletal muscleENSDARG0000003637153
acta1b / actin, alpha 1b, skeletal muscleENSDARG0000005561853
ACTC1 / zgc:86709 / P68032* / P68033* / actin, alpha, cardiac muscle 1*ENSDARG0000005791153
actb2 / Q7ZVF9 / actin, beta 2 / ACTB* / ACTG1* / POTEJ* / P60709* / P0CG39* / P60710* / P63260* / P63261* / actin beta* / actin gamma 1* / POTE ankyrin domain family member J* / Actin, cyt...ENSDARG0000003787053
si:ch211-241j12.3ENSDARG0000004396347


Protein motifs (from Interpro)
Interpro ID Name
 IPR004000  Actin family
 IPR004001  Actin, conserved site
 IPR020902  Actin/actin-like conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005869 dynactin complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr