ENSDARG00000099197


Danio rerio

Features
Gene ID: ENSDARG00000099197
  
Biological name :actc1b
  
Synonyms : acta2 / actc1b / actin, alpha, cardiac muscle 1b
  
Possible biological names infered from orthology : ACTC1 / actin, alpha, cardiac muscle 1 / P68032 / P68033
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 117024
Gene end: 125091
  
Corresponding Affymetrix probe sets: AFFX-Dr-acta1-3_at (Zebrafish Array)   AFFX-Dr-acta1-5_x_at (Zebrafish Array)   AFFX-Dr-acta1-M_at (Zebrafish Array)   Dr.815.1.S1_at (Zebrafish Array)   Dr.815.1.S1_x_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000066429
Ensembl peptide - ENSDARP00000130083
NCBI entrez gene - 58114     See in Manteia.
swissprot - Q6DHS1
swissprot - Q9I8V1
ZFIN ID - ZDB-GENE-000322-1
ZFIN ID - ZDB-GENE-030131-1229
Ensembl - ENSDARG00000099197
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ACTC1ENSGALG00000009844Gallus gallus
 ACTC1ENSG00000159251Homo sapiens
 Actc1ENSMUSG00000068614Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
acta1a / actin, alpha 1a, skeletal muscleENSDARG0000003637199
actc1a / actin, alpha, cardiac muscle 1a / ACTC1* / P68032* / P68033* / actin, alpha, cardiac muscle 1*ENSDARG0000007612699
acta1b / actin, alpha 1b, skeletal muscleENSDARG0000005561899
ACTC1 / zgc:86709 / P68032* / P68033* / actin, alpha, cardiac muscle 1*ENSDARG0000005791199
actc1a / actin, alpha, cardiac muscle 1a / ACTC1* / P68032* / P68033* / actin, alpha, cardiac muscle 1*ENSDARG0000004253599
acta2 / actin, alpha 2, smooth muscle, aorta / P62736* / P62737* / Actin, aortic smooth muscle Actin, aortic smooth muscle, intermediate form*ENSDARG0000004518098
actc1c / actin, alpha, cardiac muscle 1c / ACTG2* / P63268* / P63267* / Actin, gamma-enteric smooth muscle * / actin, gamma 2, smooth muscle, enteric*ENSDARG0000007911198
actb1 / Q7ZVI7 / actin, beta 1 / ACTB* / ACTG1* / POTEJ* / P60709* / P0CG39* / P60710* / P63260* / P63261* / actin beta* / actin gamma 1* / POTE ankyrin domain family member J* / Actin, cyt...ENSDARG0000003774692
actb2 / Q7ZVF9 / actin, beta 2 / ACTB* / ACTG1* / POTEJ* / P60709* / P0CG39* / P60710* / P63260* / P63261* / actin beta* / actin gamma 1* / POTE ankyrin domain family member J* / Actin, cyt...ENSDARG0000003787092
actr1 / ARP1 actin related protein 1, centractin / Q8R5C5* / ACTR1B* / P42025* / Beta-centractin * / ARP1 actin related protein 1 homolog B*ENSDARG0000001161153
si:ch211-241j12.3ENSDARG0000004396351


Protein motifs (from Interpro)
Interpro ID Name
 IPR004000  Actin family
 IPR004001  Actin, conserved site
 IPR020902  Actin/actin-like conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008015 blood circulation IMP
 biological_processGO:0010628 positive regulation of gene expression ISS
 biological_processGO:0060047 heart contraction IMP
 biological_processGO:0090131 mesenchyme migration ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0030027 lamellipodium ISS
 cellular_componentGO:0030175 filopodium ISS
 cellular_componentGO:0044297 cell body ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000005 artery artery increased diameter , abnormal
Show

 ZFA:0001089 myoseptum myoseptum intracellular part aggregated , abnormal
Show

 ZFA:0001338 intestine intestine smooth muscle non-contractile , abnormal
Show

 ZFA:0005277 skeletal muscle skeletal muscle intracellular part aggregated , abnormal
skeletal muscle disorganized , abnormal
skeletal muscle mitochondrion increased amount , abnormal
skeletal muscle sarcomere increased thickness , abnormal
Show

 ZFA:0009115 skeletal muscle cell skeletal muscle cell broken , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000057911 ACTC1 / zgc:86709 / P68032* / P68033* / actin, alpha, cardiac muscle 1*  / -
 ENSDARG00000045180 acta2 / actin, alpha 2, smooth muscle, aorta / P62736* / P62737* / Actin, aortic smooth muscle Actin, aortic smooth muscle, intermediate form*  / -
 ENSDARG00000099197 acta2 / actc1b / actin, alpha, cardiac muscle 1b / ACTC1* / P68032* / actin, alpha, cardiac muscle 1*  / -
 ENSDARG00000042535 actc1a / actin, alpha, cardiac muscle 1a / ACTC1* / P68032* / P68033* / actin, alpha, cardiac muscle 1*  / -






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr