ENSDARG00000042535


Danio rerio

Features
Gene ID: ENSDARG00000042535
  
Biological name :actc1a
  
Synonyms : actc1a / actin, alpha, cardiac muscle 1a
  
Possible biological names infered from orthology : ACTC1 / actin, alpha, cardiac muscle 1 / P68032 / P68033
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 29476852
Gene end: 29483514
  
Corresponding Affymetrix probe sets: Dr.10694.1.S1_at (Zebrafish Array)   NM_001001409_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000062369
Ensembl peptide - ENSDARP00000143567
NCBI entrez gene - 408256     See in Manteia.
RefSeq - NM_001001409
RefSeq Peptide - NP_001001409
swissprot - Q6IQR3
ZFIN ID - ZDB-GENE-040520-4
Ensembl - ENSDARG00000042535
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ACTC1ENSGALG00000009844Gallus gallus
 ACTC1ENSG00000159251Homo sapiens
 Actc1ENSMUSG00000068614Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ACTC1 / zgc:86709 / P68032* / P68033* / actin, alpha, cardiac muscle 1*ENSDARG00000057911100
actc1a / actin, alpha, cardiac muscle 1a / ACTC1* / P68032* / P68033* / actin, alpha, cardiac muscle 1*ENSDARG00000076126100
acta2 / actc1b / actin, alpha, cardiac muscle 1b / ACTC1* / P68032* / actin, alpha, cardiac muscle 1*ENSDARG0000009919799
acta1b / actin, alpha 1b, skeletal muscleENSDARG0000005561899
acta2 / actin, alpha 2, smooth muscle, aorta / P62736* / P62737* / Actin, aortic smooth muscle Actin, aortic smooth muscle, intermediate form*ENSDARG0000004518099
acta1a / actin, alpha 1a, skeletal muscleENSDARG0000003637199
actc1c / actin, alpha, cardiac muscle 1c / ACTG2* / P63268* / P63267* / Actin, gamma-enteric smooth muscle * / actin, gamma 2, smooth muscle, enteric*ENSDARG0000007911197
actb2 / Q7ZVF9 / actin, beta 2 / ACTB* / ACTG1* / POTEJ* / P60709* / P0CG39* / P60710* / P63260* / P63261* / actin beta* / actin gamma 1* / POTE ankyrin domain family member J* / Actin, cyt...ENSDARG0000003787093
actb1 / Q7ZVI7 / actin, beta 1 / ACTB* / ACTG1* / POTEJ* / P60709* / P0CG39* / P60710* / P63260* / P63261* / actin beta* / actin gamma 1* / POTE ankyrin domain family member J* / Actin, cyt...ENSDARG0000003774693
actr1 / ARP1 actin related protein 1, centractin / Q8R5C5* / ACTR1B* / P42025* / Beta-centractin * / ARP1 actin related protein 1 homolog B*ENSDARG0000001161153
si:ch211-241j12.3ENSDARG0000004396352


Protein motifs (from Interpro)
Interpro ID Name
 IPR004000  Actin family
 IPR004001  Actin, conserved site
 IPR020902  Actin/actin-like conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003203 endocardial cushion morphogenesis IMP
 biological_processGO:0003272 endocardial cushion formation IMP
 biological_processGO:0036302 atrioventricular canal development IMP
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000057911 ACTC1 / zgc:86709 / P68032* / P68033* / actin, alpha, cardiac muscle 1*  / -
 ENSDARG00000099197 acta2 / actc1b / actin, alpha, cardiac muscle 1b / ACTC1* / P68032* / actin, alpha, cardiac muscle 1*  / -
 ENSDARG00000042535 actc1a / actin, alpha, cardiac muscle 1a / ACTC1* / P68032* / P68033* / actin, alpha, cardiac muscle 1*  / -
 ENSDARG00000045180 acta2 / actin, alpha 2, smooth muscle, aorta / P62736* / P62737* / Actin, aortic smooth muscle Actin, aortic smooth muscle, intermediate form*  / -






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr