ENSDARG00000011740


Danio rerio

Features
Gene ID: ENSDARG00000011740
  
Biological name :u2af2b
  
Synonyms : u2af2b / U2 small nuclear RNA auxiliary factor 2b
  
Possible biological names infered from orthology : P26368 / P26369 / U2AF2 / U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 / U2 small nuclear RNA auxiliary factor 2
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 10299002
Gene end: 10324573
  
Corresponding Affymetrix probe sets: Dr.25310.1.A1_at (Zebrafish Array)   Dr.6827.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000023679
Ensembl peptide - ENSDARP00000125902
Ensembl peptide - ENSDARP00000126011
Ensembl peptide - ENSDARP00000126171
Ensembl peptide - ENSDARP00000126178
Ensembl peptide - ENSDARP00000126234
Ensembl peptide - ENSDARP00000137574
NCBI entrez gene - 402989     See in Manteia.
RefSeq - XM_009294031
RefSeq Peptide - NP_991252
swissprot - I3ISL9
swissprot - A0A0R4IMP0
swissprot - I3ISW3
swissprot - I3ITA8
swissprot - I3ITB5
swissprot - I3ITG9
swissprot - Q6P022
ZFIN ID - ZDB-GENE-040426-1881
Ensembl - ENSDARG00000011740
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 U2AF2ENSG00000063244Homo sapiens
 U2af2ENSMUSG00000030435Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
u2af2a / U2 small nuclear RNA auxiliary factor 2a / U2AF2* / P26369* / P26368* / U2 small nuclear RNA auxiliary factor 2* / U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2*ENSDARG0000001250589
uhmk1 / U2AF homology motif (UHM) kinase 1 / P97343* / Q8TAS1* / U2AF homology motif kinase 1*ENSDARG0000005957516


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006529  U2 snRNP auxilliary factor, large subunit, splicing factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016607 nuclear speck IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0089701 U2AF IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008187 poly-pyrimidine tract binding IBA
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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