ENSDARG00000011932


Danio rerio

Features
Gene ID: ENSDARG00000011932
  
Biological name :prkcbp1l
  
Synonyms : prkcbp1l / protein kinase C binding protein 1, like
  
Possible biological names infered from orthology : Q9ULU4 / zinc finger MYND-type containing 8 / ZMYND8
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 9809540
Gene end: 9864166
  
Corresponding Affymetrix probe sets: Dr.2562.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000157544
Ensembl peptide - ENSDARP00000025195
Ensembl peptide - ENSDARP00000105974
Ensembl peptide - ENSDARP00000154386
NCBI entrez gene - 323479     See in Manteia.
RefSeq - XM_005161944
swissprot - F1QYK7
swissprot - F1RDH9
ZFIN ID - ZDB-GENE-030131-2199
Ensembl - ENSDARG00000011932
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZMYND8ENSGALG00000004542Gallus gallus
 Q9ULU4ENSG00000101040Homo sapiens
 Zmynd8ENSMUSG00000039671Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zmynd8 / zinc finger, MYND-type containing 8 / Q9ULU4*ENSDARG0000000760169
zmynd11 / zinc finger, MYND-type containing 11 / Q15326* / Q8R5C8* / zinc finger, MYND domain containing 11*ENSDARG0000005724916
taf1 / TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor / TAF1L* / P21675* / Q80UV9* / Q8IZX4* / TATA-box binding protein associated factor 1* / TATA-box binding pro...ENSDARG0000003533015


Protein motifs (from Interpro)
Interpro ID Name
 IPR000313  PWWP domain
 IPR001487  Bromodomain
 IPR001965  Zinc finger, PHD-type
 IPR002893  Zinc finger, MYND-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR021931  Protein kinase C-binding protein 1
 IPR035505  ZMYND8/11, PWWP domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003712 transcription coregulator activity IBA
 molecular_functionGO:0042393 histone binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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