ENSMUSG00000039671


Mus musculus

Features
Gene ID: ENSMUSG00000039671
  
Biological name :Zmynd8
  
Synonyms : zinc finger, MYND-type containing 8 / Zmynd8
  
Possible biological names infered from orthology : Q9ULU4
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: H3
Gene start: 165784152
Gene end: 165899016
  
Corresponding Affymetrix probe sets: 10489723 (MoGene1.0st)   1426614_at (Mouse Genome 430 2.0 Array)   1429415_at (Mouse Genome 430 2.0 Array)   1445827_at (Mouse Genome 430 2.0 Array)   1456143_at (Mouse Genome 430 2.0 Array)   1458617_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000096683
Ensembl peptide - ENSMUSP00000085436
Ensembl peptide - ENSMUSP00000104885
Ensembl peptide - ENSMUSP00000136211
Ensembl peptide - ENSMUSP00000128680
Ensembl peptide - ENSMUSP00000121363
Ensembl peptide - ENSMUSP00000120932
Ensembl peptide - ENSMUSP00000120631
Ensembl peptide - ENSMUSP00000104892
Ensembl peptide - ENSMUSP00000104889
Ensembl peptide - ENSMUSP00000018050
NCBI entrez gene - 228880     See in Manteia.
MGI - MGI:1918025
RefSeq - XM_017317958
RefSeq - XM_011239502
RefSeq - XM_011239503
RefSeq - XM_011239504
RefSeq - XM_011239505
RefSeq - XM_011239506
RefSeq - XM_011239507
RefSeq - XM_011239508
RefSeq - XM_011239509
RefSeq - XM_011239510
RefSeq - XM_011239511
RefSeq - XM_011239512
RefSeq - XM_011239513
RefSeq - XM_017317920
RefSeq - XM_017317924
RefSeq - XM_017317941
RefSeq - XM_017317943
RefSeq - XM_017317954
RefSeq - NM_001252584
RefSeq - NM_001252585
RefSeq - NM_001252587
RefSeq - NM_001281926
RefSeq - NM_001291158
RefSeq - NM_027230
RefSeq - XM_006499378
RefSeq - XM_006499381
RefSeq - XM_006499382
RefSeq - XM_006499384
RefSeq - XM_006499385
RefSeq - XM_006499387
RefSeq - XM_006499390
RefSeq - XM_006499391
RefSeq - XM_006499397
RefSeq - XM_006499400
RefSeq - XM_006499401
RefSeq - XM_006499403
RefSeq - XM_006499407
RefSeq - XM_006499408
RefSeq - XM_006499414
RefSeq - XM_006499418
RefSeq - XM_006499419
RefSeq - XM_006499421
RefSeq - XM_011239501
RefSeq Peptide - NP_001239516
RefSeq Peptide - NP_001268855
RefSeq Peptide - NP_001278087
RefSeq Peptide - NP_081506
RefSeq Peptide - NP_001239513
RefSeq Peptide - NP_001239514
swissprot - A2A481
swissprot - A2A480
swissprot - Q3UH28
swissprot - A2A479
swissprot - E9Q8D1
swissprot - Q3U1M7
swissprot - A2A486
swissprot - A2A485
swissprot - A2A484
swissprot - A2A483
swissprot - A2A482
Ensembl - ENSMUSG00000039671
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prkcbp1lENSDARG00000011932Danio rerio
 zmynd8ENSDARG00000007601Danio rerio
 ZMYND8ENSGALG00000004542Gallus gallus
 Q9ULU4ENSG00000101040Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Taf1 / Q80UV9 / TATA-box binding protein associated factor 1 / TAF1L* / Q8IZX4* / P21675* / TATA-box binding protein associated factor 1 like*ENSMUSG0000003131417
Q8R5C8 / Zmynd11 / zinc finger, MYND domain containing 11 / Q15326* / zinc finger MYND-type containing 11*ENSMUSG0000002115614


Protein motifs (from Interpro)
Interpro ID Name
 IPR000313  PWWP domain
 IPR001487  Bromodomain
 IPR001965  Zinc finger, PHD-type
 IPR002893  Zinc finger, MYND-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR021931  Protein kinase C-binding protein 1
 IPR035505  ZMYND8/11, PWWP domain
 IPR036427  Bromodomain-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030336 negative regulation of cell migration ISO
 biological_processGO:0051491 positive regulation of filopodium assembly IEA
 biological_processGO:0060999 positive regulation of dendritic spine development IEA
 biological_processGO:0098815 modulation of excitatory postsynaptic potential IEA
 biological_processGO:1902897 regulation of postsynaptic density protein 95 clustering IEA
 biological_processGO:1902952 positive regulation of dendritic spine maintenance IEA
 biological_processGO:1903758 negative regulation of transcription from RNA polymerase II promoter by histone modification ISO
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0043197 dendritic spine IEA
 cellular_componentGO:0043198 dendritic shaft IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003712 transcription coregulator activity IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0035064 methylated histone binding ISO
 molecular_functionGO:0042393 histone binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA
 molecular_functionGO:0070577 lysine-acetylated histone binding ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001262 decreased body weight "lower than normal average weight " [J:61295]
Show

Allelic Composition: Zfp106tm1a(KOMP)Wtsi/Zfp106tm1a(KOMP)Wtsi
Genetic Background: B6JTyr;B6N-Zfp106tm1a(KOMP)Wtsi/Wtsi

 MP:0001539 decreased number of caudal vertebrae "reduced number of the bony segments of the tail" [Stedman s Medical Dictionary, 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Zfp106tm1a(KOMP)Wtsi/Zfp106tm1a(KOMP)Wtsi
Genetic Background: B6JTyr;B6N-Zfp106tm1a(KOMP)Wtsi/Wtsi

 MP:0005419 hypoalbuminemia "blood albumin concentration below the normal range" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Zfp106tm1a(KOMP)Wtsi/Zfp106tm1a(KOMP)Wtsi
Genetic Background: B6JTyr;B6N-Zfp106tm1a(KOMP)Wtsi/Wtsi

 MP:0005562 decreased mean corpuscular hemoglobin "less than the average levels of hemoglobin contained in an erythrocyte" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Zfp106tm1a(KOMP)Wtsi/Zfp106tm1a(KOMP)Wtsi
Genetic Background: B6JTyr;B6N-Zfp106tm1a(KOMP)Wtsi/Wtsi

 MP:0010025 decreased total body fat amount "less than the normal total amount of connective tissue composed of fat cells within the entire body" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Zfp106tm1a(KOMP)Wtsi/Zfp106tm1a(KOMP)Wtsi
Genetic Background: B6JTyr;B6N-Zfp106tm1a(KOMP)Wtsi/Wtsi

 MP:0010093 decreased circulating magnesium level "a reduction in the blood concentration of magnesium" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Zfp106tm1a(KOMP)Wtsi/Zfp106tm1a(KOMP)Wtsi
Genetic Background: B6JTyr;B6N-Zfp106tm1a(KOMP)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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