ENSDARG00000012138


Danio rerio

Features
Gene ID: ENSDARG00000012138
  
Biological name :sgce
  
Synonyms : sarcoglycan, epsilon / sgce
  
Possible biological names infered from orthology : Epsilon-sarcoglycan / O43556 / O70258
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 41038668
Gene end: 41069701
  
Corresponding Affymetrix probe sets: Dr.2720.1.A1_at (Zebrafish Array)   DrAffx.1.81.S1_at (Zebrafish Array)   NM_001002594_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125827
Ensembl peptide - ENSDARP00000099762
Ensembl peptide - ENSDARP00000113758
Ensembl peptide - ENSDARP00000156933
NCBI entrez gene - 368230     See in Manteia.
RefSeq - NM_001002594
RefSeq Peptide - NP_001002594
swissprot - I3ISF0
swissprot - Q1LW88
swissprot - Q6DHH1
ZFIN ID - ZDB-GENE-030724-1
Ensembl - ENSDARG00000012138
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SGCEENSGALG00000009670Gallus gallus
 SGCEENSG00000127990Homo sapiens
 SgceENSMUSG00000004631Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sgca / sarcoglycan, alpha / P82350* / Q16586* / Alpha-sarcoglycan *ENSDARG0000007415635


Protein motifs (from Interpro)
Interpro ID Name
 IPR006644  Dystroglycan-type cadherin-like
 IPR008908  Sarcoglycan alpha/epsilon
 IPR015919  Cadherin-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016012 sarcoglycan complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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