ENSDARG00000012513


Danio rerio

Features
Gene ID: ENSDARG00000012513
  
Biological name :sdcbp2
  
Synonyms : sdcbp2 / syndecan binding protein (syntenin) 2
  
Possible biological names infered from orthology : Q99JZ0 / Q9H190 / syndecan binding protein 2 / Syntenin-2
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 16648621
Gene end: 16682186
  
Corresponding Affymetrix probe sets: Dr.1778.1.S1_at (Zebrafish Array)   NM_212691_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116304
Ensembl peptide - ENSDARP00000145819
Ensembl peptide - ENSDARP00000016087
NCBI entrez gene - 325004     See in Manteia.
RefSeq - NM_212691
RefSeq Peptide - NP_997856
swissprot - E9QBZ6
swissprot - Q803J6
ZFIN ID - ZDB-GENE-030131-3727
Ensembl - ENSDARG00000012513
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDCBP2ENSGALG00000028347Gallus gallus
 Q9H190ENSG00000125775Homo sapiens
 Q99JZ0ENSMUSG00000027456Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sdcbp / syndecan binding protein (syntenin) / O00560* / O08992* / syndecan binding protein*ENSDARG0000003009757


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR030528  Syntenin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia IDA
 biological_processGO:0007268 chemical synaptic transmission IEA
 biological_processGO:0007416 synapse assembly IMP
 biological_processGO:0030036 actin cytoskeleton organization IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0042246 tissue regeneration IMP
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IMP
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0043325 phosphatidylinositol-3,4-bisphosphate binding IDA
 molecular_functionGO:0045545 syndecan binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000075 spinal cord spinal cord decreased amount , abnormal
spinal cord has fewer parts of type regenerating tissue synapse, abnormal
spinal cord regenerating tissue has fewer parts of type neuron , abnormal
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 ZFA:0000086 EVL EVL actin cytoskeleton disorganized , abnormal
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 ZFA:0000088 YSL YSL actin cytoskeleton disorganized , abnormal
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 ZFA:0001094 whole organism whole organism dead , abnormal
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 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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