ENSDARG00000030097


Danio rerio

Features
Gene ID: ENSDARG00000030097
  
Biological name :sdcbp
  
Synonyms : sdcbp / syndecan binding protein (syntenin)
  
Possible biological names infered from orthology : O00560 / O08992 / syndecan binding protein
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 58259455
Gene end: 58269812
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000050076
NCBI entrez gene - 407719     See in Manteia.
RefSeq - NM_214798
RefSeq Peptide - NP_999963
swissprot - F1QFG9
ZFIN ID - ZDB-GENE-081104-57
Ensembl - ENSDARG00000030097
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDCBPENSGALG00000015436Gallus gallus
 SDCBPENSG00000137575Homo sapiens
 SdcbpENSMUSG00000028249Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sdcbp2 / syndecan binding protein (syntenin) 2 / Q9H190* / Q99JZ0* / Syntenin-2 * / syndecan binding protein 2*ENSDARG0000001251356


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR030528  Syntenin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007268 chemical synaptic transmission IEA
 biological_processGO:0030036 actin cytoskeleton organization IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0045545 syndecan binding IDA


Pathways (from Reactome)
Pathway description
Ephrin signaling
Neurofascin interactions
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000007723 efnb1 / ephrin-B1 / P52795* / P98172*  / reaction / complex
 ENSDARG00000021539 ephb2b / eph receptor B2b / EPHB2* / P29323* / P54763* / EPH receptor B2* / Ephrin type-B receptor 2 *  / complex / reaction
 ENSDARG00000020164 efnb2a / O73874 / ephrin-B2a / EFNB2* / P52799* / P52800* / ephrin B2*  / complex / reaction
 ENSDARG00000042277 efnb3b / ephrin-B3b / EFNB3* / Q15768* / ephrin B3*  / reaction / complex
 ENSDARG00000074050 efnb2b / ephrin-B2b / EFNB2* / P52800* / P52799* / ephrin B2*  / complex / reaction
 ENSDARG00000076757 ephb1 / EPH receptor B1 / P54762* / Q8CBF3* / Ephrin type-B receptor 1 *  / complex / reaction
 ENSDARG00000112993 efnb3a / ephrin-B3a / EFNB3* / Q15768* / O35393* / ephrin B3*  / complex / reaction
 ENSDARG00000037373 ephb2a / eph receptor B2a / EPHB2* / P29323* / P54763* / EPH receptor B2* / Ephrin type-B receptor 2 *  / complex / reaction






 

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