ENSDARG00000007723


Danio rerio

Features
Gene ID: ENSDARG00000007723
  
Biological name :efnb1
  
Synonyms : efnb1 / ephrin-B1
  
Possible biological names infered from orthology : P52795 / P98172
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 36271016
Gene end: 36328688
  
Corresponding Affymetrix probe sets: Dr.12616.1.S1_at (Zebrafish Array)   NM_131805_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000024428
NCBI entrez gene - 114377     See in Manteia.
RefSeq - NM_131805
RefSeq Peptide - NP_571880
swissprot - Q90Z33
ZFIN ID - ZDB-GENE-010618-2
Ensembl - ENSDARG00000007723
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EFNB1ENSGALG00000036539Gallus gallus
 EFNB1ENSG00000090776Homo sapiens
 Efnb1ENSMUSG00000031217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
efnb2a / O73874 / ephrin-B2a / EFNB2* / P52799* / P52800* / ephrin B2*ENSDARG0000002016451
efnb2b / ephrin-B2b / EFNB2* / P52800* / P52799* / ephrin B2*ENSDARG0000007405046
efnb3a / ephrin-B3a / EFNB3* / Q15768* / O35393* / ephrin B3*ENSDARG0000011299343
efnb3b / ephrin-B3b / EFNB3* / Q15768* / ephrin B3*ENSDARG0000004227742


Protein motifs (from Interpro)
Interpro ID Name
 IPR001799  Ephrin receptor-binding domain
 IPR008972  Cupredoxin
 IPR019765  Ephrin, conserved site
 IPR031328  Ephrin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003404 optic vesicle morphogenesis IGI
 biological_processGO:0007411 axon guidance IBA
 biological_processGO:0048013 ephrin receptor signaling pathway IBA
 biological_processGO:1990402 embryonic liver development IMP
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0046875 ephrin receptor binding IBA


Pathways (from Reactome)
Pathway description
EPH-Ephrin signaling
EPHB-mediated forward signaling
Ephrin signaling
EPH-ephrin mediated repulsion of cells


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000041 mesoderm mesoderm apical junction complex mislocalised , abnormal
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 ZFA:0000121 lateral plate mesoderm lateral plate mesoderm establishment of epithelial cell apical/basal polarity decreased process quality , abnormal
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 ZFA:0000123 liver liver absent , abnormal
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 ZFA:0000124 liver primordium liver primordium malformed , abnormal
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 ZFA:0005738 intestinal bulb primordium intestinal bulb primordium decreased curvature , abnormal
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 ZFA:0009398 hepatoblast hepatoblast has fewer parts of type hepatoblast filopodium, abnormal
hepatoblast filopodium decreased length , abnormal
hepatoblast regulation of filopodium assembly process quality , abnormal
hepatoblast shape , abnormal
hepatoblast mislocalised posteriorly , abnormal
hepatoblast mislocalised medially , abnormal
hepatoblast anterior orientation , abnormal
hepatoblast absent , abnormal
hepatoblast mislocalised , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000011370 fyna / Q6EWH2 / FYN proto-oncogene, Src family tyrosine kinase a / FYN* / P06241* / P39688* / Tyrosine-protein kinase Fyn * / FYN proto-oncogene, Src family tyrosine kinase*  / complex / reaction
 ENSDARG00000008107 src / Q1JPZ3 / v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog / P12931* / P05480* / Neuronal proto-onco tyrosine-protein kinase Src * / SRC proto-oncogene, non-receptor tyr...  / complex / reaction
 ENSDARG00000007723 efnb1 / ephrin-B1 / P52795* / P98172*  / - / complex / reaction
 ENSDARG00000021539 ephb2b / eph receptor B2b / EPHB2* / P29323* / P54763* / EPH receptor B2* / Ephrin type-B receptor 2 *  / complex / reaction / -
 ENSDARG00000037870 actb2 / Q7ZVF9 / actin, beta 2 / ACTB* / ACTG1* / POTEJ* / P60709* / P0CG39* / P60710* / P63260* / P63261* / actin beta* / actin gamma 1* / POTE ankyrin domain family member J* / Actin, cyt...  / complex / reaction
 ENSDARG00000025319 fynb / F1RDG9 / FYN proto-oncogene, Src family tyrosine kinase b / FYN* / P39688* / P06241* / Tyrosine-protein kinase Fyn * / FYN proto-oncogene, Src family tyrosine kinase*  / complex / reaction
 ENSDARG00000037746 actb1 / Q7ZVI7 / actin, beta 1 / ACTB* / ACTG1* / POTEJ* / P60709* / P0CG39* / P60710* / P63260* / P63261* / actin beta* / actin gamma 1* / POTE ankyrin domain family member J* / Actin, cyt...  / complex / reaction
 ENSDARG00000076757 ephb1 / EPH receptor B1 / P54762* / Q8CBF3* / Ephrin type-B receptor 1 *  / - / complex / reaction
 ENSDARG00000005941 yes1 / clul1 / A1A5H8 / clusterin-like 1 (retinal) / P07947* / Q04736* / YES proto-oncogene 1, Src family tyrosine kinase*  / complex
 ENSDARG00000074050 efnb2b / ephrin-B2b / EFNB2* / P52800* / P52799* / ephrin B2*  / reaction / complex / -
 ENSDARG00000020164 efnb2a / O73874 / ephrin-B2a / EFNB2* / P52799* / P52800* / ephrin B2*  / - / complex / reaction
 ENSDARG00000037373 ephb2a / eph receptor B2a / EPHB2* / P29323* / P54763* / EPH receptor B2* / Ephrin type-B receptor 2 *  / - / complex / reaction
 ENSDARG00000025326 myl12.2 / myosin, light chain 12, genome duplicate 2 / Q3THE2* / MYL12A* / MYL12B* / O14950* / P19105* / myosin light chain 12A* / myosin light chain 12B* / Myosin regulatory light chain 12B *  / reaction
 ENSDARG00000044573 cdc42 / cell division cycle 42 / P60766* / P60953* / Cell division control *  / complex
 ENSDARG00000030097 sdcbp / syndecan binding protein (syntenin) / O00560* / O08992* / syndecan binding protein*  / complex / reaction
 ENSDARG00000067916 lyn / LYN proto-oncogene, Src family tyrosine kinase / P07948* / P25911*  / complex
 ENSDARG00000005651 hrasb / -Ha-ras Harvey rat sarcoma viral oncogene homolog b / HRAS* / P01112* / Q61411* / HRas proto-oncogene, GTPase* / GTPase HRas GTPase HRas, N-terminally processed*  / reaction / complex
 ENSDARG00000035535 rasa1a / RAS p21 protein activator (GTPase activating protein) 1a / RASA1* / P20936* / RAS p21 protein activator 1*  / complex
 ENSDARG00000073848 arhgef7b / Rho guanine nucleotide exchange factor (GEF) 7b / Q14155* / ARHGEF7* / Rho guanine nucleotide exchange factor 7*  / complex / reaction
 ENSDARG00000042277 efnb3b / ephrin-B3b / EFNB3* / Q15768* / ephrin B3*  / complex / - / reaction
 ENSDARG00000060415 arhgef28 / Rho guanine nucleotide exchange factor (GEF) 28 / Q8N1W1* / Rho guanine nucleotide exchange factor 28*  / complex / reaction
 ENSDARG00000039489 git1 / G protein-coupled receptor kinase interacting ArfGAP 1 / Q68FF6* / Q9Y2X7* / GIT ArfGAP 1* / ARF GTPase-activating protein GIT1 *  / complex / reaction
 ENSDARG00000043361 nck2b / NCK adaptor protein 2b / NCK2* / O43639* / O55033* / NCK adaptor protein 2* / Cytoplasmic protein NCK2 *  / reaction / complex
 ENSDARG00000075962 vav3b / vav 3 guanine nucleotide exchange factor b / VAV3* / Q9UKW4* / Q9R0C8* / vav 3 oncogene* / vav guanine nucleotide exchange factor 3*  / complex / reaction
 ENSDARG00000018206 nck2a / NCK adaptor protein 2a / NCK2* / O43639* / O55033* / NCK adaptor protein 2* / Cytoplasmic protein NCK2 *  / complex / reaction
 ENSDARG00000006299 arhgef7a / Rho guanine nucleotide exchange factor (GEF) 7a / Q14155* / Q9ES28* / ARHGEF7* / Rho guanine nucleotide exchange factor 7*  / reaction / complex
 ENSDARG00000073665 rasa1b / RAS p21 protein activator (GTPase activating protein) 1b / RASA1* / P20936* / RAS p21 protein activator 1*  / complex
 ENSDARG00000112993 efnb3a / ephrin-B3a / EFNB3* / Q15768* / O35393* / ephrin B3*  / reaction / complex / -
 ENSDARG00000030376 grin2bb / glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b / GRIN2B* / Q13224* / glutamate receptor, ionotropic, NMDA2B (epsilon 2)* / glutamate ionotropic recept...  / complex
 ENSDARG00000044718 vav2 / vav 2 guanine nucleotide exchange factor / Q60992* / P52735* / vav 2 oncogene* / vav guanine nucleotide exchange factor 2*  / reaction / complex






 

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