ENSDARG00000013317


Danio rerio

Features
Gene ID: ENSDARG00000013317
  
Biological name :pygmb
  
Synonyms : phosphorylase, glycogen, muscle b / pygmb
  
Possible biological names infered from orthology : glycogen phosphorylase, muscle associated / Glycogen phosphorylase, muscle form / P11217 / PYGM / Q9WUB3
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 22823889
Gene end: 22852189
  
Corresponding Affymetrix probe sets: Dr.17491.1.A1_at (Zebrafish Array)   Dr.17491.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000124042
Ensembl peptide - ENSDARP00000142892
Ensembl peptide - ENSDARP00000124162
Ensembl peptide - ENSDARP00000111947
NCBI entrez gene - 393444     See in Manteia.
RefSeq - NM_001328031
RefSeq Peptide - NP_001314960
swissprot - E7EXT3
swissprot - A0A1D5NSS4
swissprot - F8W3T2
ZFIN ID - ZDB-GENE-040426-1206
Ensembl - ENSDARG00000013317
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PYGMENSG00000068976Homo sapiens
 PygmENSMUSG00000032648Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pygma / phosphorylase, glycogen, muscle A / PYGM* / P11217* / Q9WUB3* / Glycogen phosphorylase, muscle form * / glycogen phosphorylase, muscle associated*ENSDARG0000005551890
pygb / phosphorylase, glycogen; brain / P11216* / Q8CI94* / glycogen phosphorylase B* / Glycogen phosphorylase, brain form *ENSDARG0000000202181
pygl / phosphorylase, glycogen, liver / P06737* / Q9ET01* / glycogen phosphorylase L* / Glycogen phosphorylase, liver form *ENSDARG0000000219778


Protein motifs (from Interpro)
Interpro ID Name
 IPR000811  Glycosyl transferase, family 35
 IPR011833  Glycogen/starch/alpha-glucan phosphorylase
 IPR035090  Phosphorylase pyridoxal-phosphate attachment site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0005980 glycogen catabolic process IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004645 phosphorylase activity IEA
 molecular_functionGO:0008184 glycogen phosphorylase activity IBA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IBA
 molecular_functionGO:0102250 linear malto-oligosaccharide phosphorylase activity IEA
 molecular_functionGO:0102499 SHG alpha-glucan phosphorylase activity IEA


Pathways (from Reactome)
Pathway description
Glycogen breakdown (glycogenolysis)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000030604 phkg1a / phosphorylase kinase, gamma 1a (muscle) / PHKG1* / Q16816* / P07934* / phosphorylase kinase catalytic subunit gamma 1* / Phosphorylase b kinase gamma catalytic chain, skeletal musc...  / reaction
 ENSDARG00000055518 pygma / phosphorylase, glycogen, muscle A / PYGM* / P11217* / Q9WUB3* / Glycogen phosphorylase, muscle form * / glycogen phosphorylase, muscle associated*  / complex
 ENSDARG00000078284 phkb / phosphorylase kinase, beta / Q7TSH2* / Q93100* / phosphorylase kinase regulatory subunit beta* / Phosphorylase b kinase regulatory subunit beta *  / reaction
 ENSDARG00000013317 pygmb / phosphorylase, glycogen, muscle b / PYGM* / P11217* / Q9WUB3* / Glycogen phosphorylase, muscle form * / glycogen phosphorylase, muscle associated*  / complex
 ENSDARG00000100825 calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)  / reaction






 

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