ENSDARG00000013726


Danio rerio

Features
Gene ID: ENSDARG00000013726
  
Biological name :ap4b1
  
Synonyms : adaptor-related protein complex 4, beta 1 subunit / ap4b1
  
Possible biological names infered from orthology : AP-4 complex subunit beta-1 / Gm43064 / Q9WV76 / Q9Y6B7
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 354418
Gene end: 367693
  
Corresponding Affymetrix probe sets: Dr.22313.1.S1_at (Zebrafish Array)   NM_200338_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000014260
Ensembl peptide - ENSDARP00000151074
NCBI entrez gene - 393309     See in Manteia.
RefSeq - NM_200338
RefSeq Peptide - NP_956632
swissprot - F1QV11
ZFIN ID - ZDB-GENE-040426-1284
Ensembl - ENSDARG00000013726
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AP4B1ENSGALG00000035295Gallus gallus
 AP4B1ENSG00000134262Homo sapiens
 Ap4b1ENSMUSG00000032952Mus musculus
 Gm43064ENSMUSG00000105053Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ap1b1 / adaptor-related protein complex 1, beta 1 subunit / O35643* / Q10567* / Mus musculus adaptor protein complex AP-1, beta 1 subunit (Ap1b1), transcript variant 4, mRNA.*ENSDARG0000002062129
ap2b1 / adaptor-related protein complex 2, beta 1 subunit / P63010* / Q9DBG3* / AP-2 complex subunit beta *ENSDARG0000003515228


Protein motifs (from Interpro)
Interpro ID Name
 IPR002553  Clathrin/coatomer adaptor, adaptin-like, N-terminal
 IPR011989  Armadillo-like helical
 IPR015151  Beta-adaptin appendage, C-terminal subdomain
 IPR016024  Armadillo-type fold
 IPR016342  AP-1/2/4 complex subunit beta
 IPR026739  AP complex subunit beta


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA
 cellular_componentGO:0030131 clathrin adaptor complex IEA
 molecular_functionGO:0030276 clathrin binding IEA


Pathways (from Reactome)
Pathway description
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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