ENSDARG00000013732


Danio rerio

Features
Gene ID: ENSDARG00000013732
  
Biological name :vta1
  
Synonyms : vesicle (multivesicular body) trafficking 1 / vta1
  
Possible biological names infered from orthology : Q9CR26 / Q9NP79 / vesicle trafficking 1
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 37300296
Gene end: 37379578
  
Corresponding Affymetrix probe sets: Dr.2866.1.S1_at (Zebrafish Array)   NM_213140_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000067052
Ensembl peptide - ENSDARP00000146885
NCBI entrez gene - 406414     See in Manteia.
RefSeq - NM_213140
RefSeq Peptide - NP_998305
swissprot - Q5RJ50
ZFIN ID - ZDB-GENE-040426-2154
Ensembl - ENSDARG00000013732
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VTA1ENSGALG00000013810Gallus gallus
 VTA1ENSG00000009844Homo sapiens
 Vta1ENSMUSG00000019868Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR023175  Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr