ENSGALG00000013810


Gallus gallus

Features
Gene ID: ENSGALG00000013810
  
Biological name :VTA1
  
Synonyms : vesicle trafficking 1 / VTA1
  
Possible biological names infered from orthology : Q9CR26 / Q9NP79 / vesicle (multivesicular body) trafficking 1
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 53162349
Gene end: 53191480
  
Corresponding Affymetrix probe sets: Gga.19084.1.S1_s_at (Chicken Array)   Gga.9584.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000022375
Ensembl peptide - ENSGALP00000061448
Ensembl peptide - ENSGALP00000058667
NCBI entrez gene - 421674     See in Manteia.
RefSeq - XM_015284197
RefSeq - XM_419713
swissprot - E1BRP3
swissprot - A0A1L1RRM0
swissprot - A0A1L1RIU3
Ensembl - ENSGALG00000013810
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vta1ENSDARG00000013732Danio rerio
 VTA1ENSG00000009844Homo sapiens
 Vta1ENSMUSG00000019868Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR023175  Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0046755 viral budding IEA
 biological_processGO:0071985 multivesicular body sorting pathway IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0008022 protein C-terminus binding IEA


Pathways (from Reactome)
Pathway description
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000012879 VPS4B / vacuolar protein sorting 4 homolog B / O75351* / P46467* / vacuolar protein sorting 4B*  / complex
 ENSGALG00000036790 P79781 / RPS27A / Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a / P62983* / P62979* / AL136454.1* / ribosomal protein S27a*  / reaction
 ENSGALG00000013160 CHMP5 / charged multivesicular body protein 5 / Q9D7S9* / Q9NZZ3*  / complex
 ENSGALG00000037716 UBA52 / ubiquitin A-52 residue ribosomal protein fusion product 1 / P62984* / P62987* / Gm5239* / Gm11808* / predicted gene 11808*  / reaction






 

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contact: otassy@igbmc.fr