ENSDARG00000014041


Danio rerio

Features
Gene ID: ENSDARG00000014041
  
Biological name :smarcad1a
  
Synonyms : B0R061 / smarcad1a / SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 a
  
Possible biological names infered from orthology : Q04692 / Q9H4L7 / SMARCAD1 / SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 29635968
Gene end: 29652415
  
Corresponding Affymetrix probe sets: Dr.3950.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000085842
Ensembl peptide - ENSDARP00000122607
Ensembl peptide - ENSDARP00000118043
NCBI entrez gene - 557875     See in Manteia.
RefSeq - NM_001020774
RefSeq Peptide - NP_001018610
swissprot - B0R061
swissprot - B0R060
swissprot - F6NTX5
ZFIN ID - ZDB-GENE-050522-499
Ensembl - ENSDARG00000014041
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCAD1ENSGALG00000037339Gallus gallus
 Q9H4L7ENSG00000163104Homo sapiens
 Q04692ENSMUSG00000029920Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
E7F1C4 / smarcad1b / SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 b / Q9H4L7* / Q04692* / SMARCAD1* / SWI/SNF-related, mat...ENSDARG0000007372152


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR003892  Ubiquitin system component Cue
 IPR009060  UBA-like superfamily
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000729 DNA double-strand break processing ISS
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0035861 site of double-strand break ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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