ENSG00000163104


Homo sapiens

Features
Gene ID: ENSG00000163104
  
Biological name :SMARCAD1
  
Synonyms : Q9H4L7 / SMARCAD1 / SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q22.3
Gene start: 94207611
Gene end: 94291292
  
Corresponding Affymetrix probe sets: 223197_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000423286
Ensembl peptide - ENSP00000415576
Ensembl peptide - ENSP00000424624
Ensembl peptide - ENSP00000346217
Ensembl peptide - ENSP00000351947
Ensembl peptide - ENSP00000378413
NCBI entrez gene - 56916     See in Manteia.
OMIM - 612761
RefSeq - XM_017008465
RefSeq - NM_001128429
RefSeq - NM_001128430
RefSeq - NM_001254949
RefSeq - NM_020159
RefSeq - XM_017008463
RefSeq - XM_017008464
RefSeq Peptide - NP_064544
RefSeq Peptide - NP_001241878
RefSeq Peptide - NP_001121902
RefSeq Peptide - NP_001121901
swissprot - F8W9M2
swissprot - Q9H4L7
swissprot - D6RAY8
Ensembl - ENSG00000163104
  
Related genetic diseases (OMIM): 129200 - Basan syndrome, 129200
  136000 - Adermatoglyphia, 136000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 B0R061ENSDARG00000014041Danio rerio
 E7F1C4ENSDARG00000073721Danio rerio
 SMARCAD1ENSGALG00000037339Gallus gallus
 Q04692ENSMUSG00000029920Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR003892  Ubiquitin system component Cue
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000018 regulation of DNA recombination IEP
 biological_processGO:0000729 DNA double-strand break processing IMP
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006325 chromatin organization NAS
 biological_processGO:0006338 chromatin remodeling NAS
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0009117 nucleotide metabolic process NAS
 biological_processGO:0043044 ATP-dependent chromatin remodeling IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated NAS
 biological_processGO:0051260 protein homooligomerization NAS
 biological_processGO:0051304 chromosome separation IMP
 biological_processGO:0070932 histone H3 deacetylation IMP
 biological_processGO:0070933 histone H4 deacetylation IMP
 cellular_componentGO:0000792 heterochromatin ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0016363 nuclear matrix NAS
 cellular_componentGO:0035861 site of double-strand break IDA
 cellular_componentGO:0043596 nuclear replication fork IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0000963 Thin skin 
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0000968 Ectodermal dysplasia 
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 HP:0000988 Skin rash 
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 HP:0001056 Milia 
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 HP:0001072 Thickened skin 
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 HP:0001182 Tapered fingers 
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 HP:0001217 Clubbing "Non-edematous swelling/broadening of the soft tissue of the fingertips in all dimensions." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0007455 Adermatoglyphia 
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 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0009775 Amniotic bands "Annular constrictions around the digits, limbs, or trunk, occurring congenitally (sometimes causing intrauterine autoamputation) and also associated with a wide variety of disorders. Constrictive amniotic bands are the result of primary amniotic rupture, which can lead to entanglement of fetal tissue (especially limbs) in fibrous amniotic strangs." [HPO:curators]
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 HP:0010621 Cutaneous syndactyly of the toes "Webbing or fusion of the toes involving soft parts only." [HPO:curators]
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 HP:0010765 Palmar hyperkeratosis "`Hyperkeratosis` (HP:0000962) affecting the palm of the hand." [HPO:probinson]
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 HP:0025092 Epidermal acanthosis "Diffuse hypertrophy or thickening of the stratum spinosum of the epidermis (prickle cell layer of the skin)." []
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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