ENSDARG00000014161


Danio rerio

Features
Gene ID: ENSDARG00000014161
  
Biological name :ercc4
  
Synonyms : ercc4 / excision repair cross-complementation group 4
  
Possible biological names infered from orthology : DNA repair endonuclease XPF / ERCC excision repair 4, endonuclease catalytic subunit / Q92889 / Q9QZD4
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 19958845
Gene end: 19975373
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000018811
Ensembl peptide - ENSDARP00000156962
NCBI entrez gene - 327322     See in Manteia.
RefSeq - NM_199785
RefSeq Peptide - NP_956079
swissprot - F1QK90
ZFIN ID - ZDB-GENE-030131-5533
Ensembl - ENSDARG00000014161
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ERCC4ENSGALG00000002981Gallus gallus
 ERCC4ENSG00000175595Homo sapiens
 Ercc4ENSMUSG00000022545Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006166  ERCC4 domain
 IPR006167  DNA repair protein XPF
 IPR010994  RuvA domain 2-like
 IPR011335  Restriction endonuclease type II-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000712 resolution of meiotic recombination intermediates IBA
 biological_processGO:0000724 double-strand break repair via homologous recombination IBA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006296 nucleotide-excision repair, DNA incision, 5"-to lesion IBA
 biological_processGO:1901255 nucleotide-excision repair involved in interstrand cross-link repair IBA
 cellular_componentGO:0000110 nucleotide-excision repair factor 1 complex IBA
 molecular_functionGO:0000014 single-stranded DNA endodeoxyribonuclease activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003684 damaged DNA binding IBA
 molecular_functionGO:0003697 single-stranded DNA binding IBA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004520 endodeoxyribonuclease activity IEA


Pathways (from Reactome)
Pathway description
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Fanconi Anemia Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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