ENSDARG00000014248


Danio rerio

Features
Gene ID: ENSDARG00000014248
  
Biological name :pdlim3b
  
Synonyms : pdlim3b / PDZ and LIM domain 3b
  
Possible biological names infered from orthology : O70209 / PDLIM3 / PDZ and LIM domain 3 / PDZ and LIM domain protein 3 / Q53GG5
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 29782508
Gene end: 29800107
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000015078
Ensembl peptide - ENSDARP00000142605
NCBI entrez gene - 561865     See in Manteia.
swissprot - A0A140LH75
swissprot - Q0PWB8
ZFIN ID - ZDB-GENE-060130-104
Ensembl - ENSDARG00000014248
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDLIM3ENSGALG00000013414Gallus gallus
 PDLIM3ENSG00000154553Homo sapiens
 O70209ENSMUSG00000031636Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdlim3a / PDZ and LIM domain 3a / Q53GG5* / O70209* / PDLIM3* / PDZ and LIM domain 3* / PDZ and LIM domain protein 3 *ENSDARG0000001102364
pdlim1 / PDZ and LIM domain 1 (elfin) / O70400* / O00151* / PDZ and LIM domain 1* / PDZ and LIM domain protein 1 *ENSDARG0000001984554
pdlim4 / PDZ and LIM domain 4 / P50479*ENSDARG0000006897347
pdlim2 / PDZ and LIM domain 2 (mystique) / Q8R1G6* / Q96JY6* / PDZ and LIM domain 2* / PDZ and LIM domain protein 2 *ENSDARG0000006995634


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR006643  Zasp-like motif
 IPR031847  Domain of unknown function DUF4749


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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