ENSDARG00000069956


Danio rerio

Features
Gene ID: ENSDARG00000069956
  
Biological name :pdlim2
  
Synonyms : pdlim2 / PDZ and LIM domain 2 (mystique)
  
Possible biological names infered from orthology : PDZ and LIM domain 2 / PDZ and LIM domain protein 2 / Q8R1G6 / Q96JY6
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 38190233
Gene end: 38317914
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000109858
Ensembl peptide - ENSDARP00000127944
NCBI entrez gene - 560322     See in Manteia.
RefSeq - NM_001326402
RefSeq - XM_009304150
RefSeq Peptide - NP_001313331
swissprot - X1WCK0
swissprot - F1QCW0
ZFIN ID - ZDB-GENE-070308-4
Ensembl - ENSDARG00000069956
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDLIM2ENSG00000120913Homo sapiens
 Pdlim2ENSMUSG00000022090Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdlim1 / PDZ and LIM domain 1 (elfin) / O70400* / O00151* / PDZ and LIM domain 1* / PDZ and LIM domain protein 1 *ENSDARG0000001984532
pdlim3b / PDZ and LIM domain 3b / Q53GG5* / O70209* / PDLIM3* / PDZ and LIM domain 3* / PDZ and LIM domain protein 3 *ENSDARG0000001424829
pdlim4 / PDZ and LIM domain 4 / P50479*ENSDARG0000006897329
pdlim3a / PDZ and LIM domain 3a / Q53GG5* / O70209* / PDLIM3* / PDZ and LIM domain 3* / PDZ and LIM domain protein 3 *ENSDARG0000001102329


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR031847  Domain of unknown function DUF4749


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr