ENSDARG00000019845


Danio rerio

Features
Gene ID: ENSDARG00000019845
  
Biological name :pdlim1
  
Synonyms : pdlim1 / PDZ and LIM domain 1 (elfin)
  
Possible biological names infered from orthology : O00151 / O70400 / PDZ and LIM domain 1 / PDZ and LIM domain protein 1
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 25762908
Gene end: 25774183
  
Corresponding Affymetrix probe sets: Dr.23376.1.S1_at (Zebrafish Array)   Dr.23376.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000046980
Ensembl peptide - ENSDARP00000114036
swissprot - B8A5V5
swissprot - B8A5V6
ZFIN ID - ZDB-GENE-030131-5227
Ensembl - ENSDARG00000019845
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDLIM1ENSGALG00000005422Gallus gallus
 O00151ENSG00000107438Homo sapiens
 O70400ENSMUSG00000055044Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdlim3b / PDZ and LIM domain 3b / Q53GG5* / O70209* / PDLIM3* / PDZ and LIM domain 3* / PDZ and LIM domain protein 3 *ENSDARG0000001424853
pdlim4 / PDZ and LIM domain 4 / P50479*ENSDARG0000006897347
pdlim3a / PDZ and LIM domain 3a / Q53GG5* / O70209* / PDLIM3* / PDZ and LIM domain 3* / PDZ and LIM domain protein 3 *ENSDARG0000001102346
pdlim2 / PDZ and LIM domain 2 (mystique) / Q8R1G6* / Q96JY6* / PDZ and LIM domain 2* / PDZ and LIM domain protein 2 *ENSDARG0000006995636


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR006643  Zasp-like motif
 IPR028537  PDZ and LIM domain protein 1
 IPR031847  Domain of unknown function DUF4749


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005856 cytoskeleton IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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