ENSG00000107438


Homo sapiens

Features
Gene ID: ENSG00000107438
  
Biological name :PDLIM1
  
Synonyms : O00151 / PDLIM1 / PDZ and LIM domain 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q23.33
Gene start: 95237572
Gene end: 95291024
  
Corresponding Affymetrix probe sets: 208690_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000360305
NCBI entrez gene - 9124     See in Manteia.
OMIM - 605900
RefSeq - XM_011540330
RefSeq - NM_020992
RefSeq Peptide - NP_066272
swissprot - O00151
swissprot - V9HW92
Ensembl - ENSG00000107438
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdlim1ENSDARG00000019845Danio rerio
 PDLIM1ENSGALG00000005422Gallus gallus
 O70400ENSMUSG00000055044Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDLIM3 / Q53GG5 / PDZ and LIM domain 3ENSG0000015455350
P50479 / PDLIM4 / PDZ and LIM domain 4ENSG0000013143545
PDLIM2 / Q96JY6 / PDZ and LIM domain 2ENSG0000012091334


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR006643  Zasp-like motif
 IPR028537  PDZ and LIM domain protein 1
 IPR031847  Domain of unknown function DUF4749
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006979 response to oxidative stress TAS
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005913 cell-cell adherens junction IDA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0030018 Z disc IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0098641 cadherin binding involved in cell-cell adhesion IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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