ENSGALG00000005422


Gallus gallus

Features
Gene ID: ENSGALG00000005422
  
Biological name :PDLIM1
  
Synonyms : PDLIM1 / PDZ and LIM domain 1
  
Possible biological names infered from orthology : O00151 / O70400 / PDZ and LIM domain protein 1
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 16449298
Gene end: 16486297
  
Corresponding Affymetrix probe sets: Gga.5362.1.S1_a_at (Chicken Array)   GgaAffx.26498.1.S1_at (Chicken Array)   GgaAffx.26498.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008695
Ensembl peptide - ENSGALP00000044221
Ensembl peptide - ENSGALP00000043821
NCBI entrez gene - 428948     See in Manteia.
RefSeq - XM_426503
RefSeq - XM_004942093
RefSeq - XM_015288527
RefSeq - XM_015288529
RefSeq - XM_004942091
swissprot - A0A1D5NV48
swissprot - A0A1D5NU14
swissprot - E1C852
Ensembl - ENSGALG00000005422
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdlim1ENSDARG00000019845Danio rerio
 O00151ENSG00000107438Homo sapiens
 O70400ENSMUSG00000055044Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDLIM3 / PDZ and LIM domain protein 3 / O70209* / Q53GG5* / PDZ and LIM domain 3*ENSGALG0000001341446
PDLIM4 / Q9PW72 / PDZ and LIM domain protein 4 / P50479* / P70271* / PDZ and LIM domain 4*ENSGALG0000003987240


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR006643  Zasp-like motif
 IPR028537  PDZ and LIM domain protein 1
 IPR031847  Domain of unknown function DUF4749


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005913 cell-cell adherens junction IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0098641 cadherin binding involved in cell-cell adhesion IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr