ENSDARG00000014358


Danio rerio

Features
Gene ID: ENSDARG00000014358
  
Biological name :optc
  
Synonyms : optc / opticin
  
Possible biological names infered from orthology : opticin isoform 4 / Q9UBM4
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 23205889
Gene end: 23219367
  
Corresponding Affymetrix probe sets: Dr.3019.1.A1_at (Zebrafish Array)   NM_001003583_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000018034
NCBI entrez gene - 445189     See in Manteia.
RefSeq - XM_005172873
RefSeq - NM_001003583
RefSeq Peptide - NP_001003583
swissprot - Q15JE7
ZFIN ID - ZDB-GENE-030131-1798
Ensembl - ENSDARG00000014358
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OPTCENSGALG00000003554Gallus gallus
 OPTCENSG00000188770Homo sapiens
 OptcENSMUSG00000010311Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
epyc / epiphycan / P70186* / Q99645*ENSDARG0000005695043
ogn / osteoglycin / P20774* / Q62000*ENSDARG0000004413234
zgc:193598 / OGN* / P20774* / Q62000* / osteoglycin*ENSDARG0000003148933


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR027217  Epiphycan
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IBA
 cellular_componentGO:0005615 extracellular space IBA


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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