ENSDARG00000014498


Danio rerio

Features
Gene ID: ENSDARG00000014498
  
Biological name :ythdf2
  
Synonyms : E7F1H9 / ythdf2 / YTH N(6)-methyladenosine RNA binding protein 2
  
Possible biological names infered from orthology : Q91YT7 / Q9Y5A9 / YTH domain family 2
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 27407918
Gene end: 27419499
  
Corresponding Affymetrix probe sets: Dr.11148.1.S1_at (Zebrafish Array)   Dr.18545.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000107692
Ensembl peptide - ENSDARP00000150327
NCBI entrez gene - 393220     See in Manteia.
RefSeq - XM_005158763
swissprot - E7F1H9
ZFIN ID - ZDB-GENE-040426-948
Ensembl - ENSDARG00000014498
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 YTHDF2ENSGALG00000034831Gallus gallus
 Q9Y5A9ENSG00000198492Homo sapiens
 Q91YT7ENSMUSG00000040025Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ythdf3 / YTH N(6)-methyladenosine RNA binding protein 3 / Q7Z739* / Q8BYK6* / YTH domain family 3*ENSDARG0000005793959
ythdf1 / YTH N(6)-methyladenosine RNA binding protein 1 / P59326* / Q9BYJ9* / YTH domain family 1*ENSDARG0000001644757


Protein motifs (from Interpro)
Interpro ID Name
 IPR007275  YTH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001556 oocyte maturation ISS
 biological_processGO:0006401 RNA catabolic process IMP
 biological_processGO:0006402 mRNA catabolic process IMP
 biological_processGO:0045746 negative regulation of Notch signaling pathway IMP
 biological_processGO:0048598 embryonic morphogenesis IMP
 biological_processGO:0061157 mRNA destabilization IDA
 biological_processGO:0098508 endothelial to hematopoietic transition IMP
 biological_processGO:1902036 regulation of hematopoietic stem cell differentiation IMP
 biological_processGO:1903538 regulation of meiotic cell cycle process involved in oocyte maturation ISS
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:1990247 N6-methyladenosine-containing RNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism decreased amount , abnormal
whole organism absent , abnormal
whole organism increased amount , abnormal
whole organism deoxyribonucleic acid increased amount , abnormal
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 ZFA:0005028 ventral wall of dorsal aorta ventral wall of dorsal aorta hematopoietic multipotent progenitor cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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