ENSDARG00000016447


Danio rerio

Features
Gene ID: ENSDARG00000016447
  
Biological name :ythdf1
  
Synonyms : ythdf1 / YTH N(6)-methyladenosine RNA binding protein 1
  
Possible biological names infered from orthology : P59326 / Q9BYJ9 / YTH domain family 1
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 23034718
Gene end: 23120252
  
Corresponding Affymetrix probe sets: Dr.10502.1.S1_at (Zebrafish Array)   Dr.10502.1.S2_at (Zebrafish Array)   Dr.3039.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000005746
Ensembl peptide - ENSDARP00000153154
NCBI entrez gene - 327606     See in Manteia.
RefSeq - XM_005167004
RefSeq Peptide - NP_997878
swissprot - Q802Z0
ZFIN ID - ZDB-GENE-040426-2786
Ensembl - ENSDARG00000016447
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 YTHDF1ENSGALG00000005745Gallus gallus
 Q9BYJ9ENSG00000149658Homo sapiens
 P59326ENSMUSG00000038848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ythdf3 / YTH N(6)-methyladenosine RNA binding protein 3 / Q7Z739* / Q8BYK6* / YTH domain family 3*ENSDARG0000005793959
ythdf2 / E7F1H9 / YTH N(6)-methyladenosine RNA binding protein 2 / Q9Y5A9* / Q91YT7* / YTH domain family 2*ENSDARG0000001449857


Protein motifs (from Interpro)
Interpro ID Name
 IPR007275  YTH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr