ENSDARG00000014806


Danio rerio

Features
Gene ID: ENSDARG00000014806
  
Biological name :hacd2
  
Synonyms : 3-hydroxyacyl-CoA dehydratase 2 / hacd2
  
Possible biological names infered from orthology : Q6Y1H2 / Q9D3B1 / Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 38029475
Gene end: 38042939
  
Corresponding Affymetrix probe sets: Dr.12800.1.S1_at (Zebrafish Array)   NM_199861_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000112613
Ensembl peptide - ENSDARP00000122534
Ensembl peptide - ENSDARP00000119275
NCBI entrez gene - 334121     See in Manteia.
RefSeq - NM_199861
RefSeq Peptide - NP_956155
swissprot - B0V199
swissprot - B0V198
swissprot - F1QWS6
ZFIN ID - ZDB-GENE-030131-6053
Ensembl - ENSDARG00000014806
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HACD2ENSGALG00000011704Gallus gallus
 HACD2ENSG00000206527Homo sapiens
 Hacd2ENSMUSG00000035376Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hacd1 / 3-hydroxyacyl-CoA dehydratase 1 / B0YJ81*ENSDARG0000010374458
hacd3 / Q7SY06 / 3-hydroxyacyl-CoA dehydratase 3 / Q8K2C9* / Q9P035* / Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 *ENSDARG0000001603824
HACD4 / si:ch73-41h24.1 / A2AKM2* / Q5VWC8* / 3-hydroxyacyl-CoA dehydratase 4* / Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 *ENSDARG0000010222118
CR376779.1 / HACD2* / Q6Y1H2* / 3-hydroxyacyl-CoA dehydratase 2*ENSDARG0000010976011


Protein motifs (from Interpro)
Interpro ID Name
 IPR007482  Protein-tyrosine phosphatase-like, PTPLA


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006631 fatty acid metabolic process IEA
 biological_processGO:0006633 fatty acid biosynthetic process IEA
 biological_processGO:0030148 sphingolipid biosynthetic process IBA
 biological_processGO:0030497 fatty acid elongation IBA
 biological_processGO:0042761 very long-chain fatty acid biosynthetic process IBA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane IBA
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0018812 3-hydroxyacyl-CoA dehydratase activity IBA
 molecular_functionGO:0102158 very-long-chain 3-hydroxyacyl-CoA dehydratase activity IEA
 molecular_functionGO:0102343 3-hydroxy-arachidoyl-CoA dehydratase activity IEA
 molecular_functionGO:0102344 3-hydroxy-behenoyl-CoA dehydratase activity IEA
 molecular_functionGO:0102345 3-hydroxy-lignoceroyl-CoA dehydratase activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of very long-chain fatty acyl-CoAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr