ENSDARG00000014867


Danio rerio

Features
Gene ID: ENSDARG00000014867
  
Biological name :rpl8
  
Synonyms : Q6P0V6 / ribosomal protein L8 / rpl8
  
Possible biological names infered from orthology : 60S ribosomal protein L8 / P62917 / P62918
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 33323104
Gene end: 33329787
  
Corresponding Affymetrix probe sets: Dr.4091.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000115147
Ensembl peptide - ENSDARP00000005651
Ensembl peptide - ENSDARP00000122171
NCBI entrez gene - 393686     See in Manteia.
swissprot - B0S6P5
swissprot - Q6P0V6
ZFIN ID - ZDB-GENE-040426-1670
Ensembl - ENSDARG00000014867
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL8ENSGALG00000016232Gallus gallus
 RPL8ENSG00000161016Homo sapiens
 Rpl8ENSMUSG00000003970Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002171  Ribosomal protein L2
 IPR008991  Translation protein SH3-like domain superfamily
 IPR012340  Nucleic acid-binding, OB-fold
 IPR014722  Ribosomal protein L2, domain 2
 IPR014726  Ribosomal protein L2, domain 3
 IPR022666  Ribosomal Proteins L2, RNA binding domain
 IPR022669  Ribosomal protein L2, C-terminal
 IPR022671  Ribosomal protein L2, conserved site
 IPR023672  Ribosomal protein L2, archaeal-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015934 large ribosomal subunit IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0019843 rRNA binding IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr