ENSGALG00000016232


Gallus gallus

Features
Gene ID: ENSGALG00000016232
  
Biological name :RPL8
  
Synonyms : ribosomal protein L8 / RPL8
  
Possible biological names infered from orthology : 60S ribosomal protein L8 / P62917 / P62918
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 112065359
Gene end: 112069618
  
Corresponding Affymetrix probe sets: Gga.4650.1.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000059317
Ensembl peptide - ENSGALP00000061954
Ensembl peptide - ENSGALP00000061923
Ensembl peptide - ENSGALP00000061493
Ensembl peptide - ENSGALP00000060783
Ensembl peptide - ENSGALP00000026126
Ensembl peptide - ENSGALP00000059261
NCBI entrez gene - 418568     See in Manteia.
RefSeq - NM_001277728
RefSeq Peptide - NP_001264657
swissprot - A0A1L1RPS6
swissprot - A0A1L1RSZ5
swissprot - F1NIX0
swissprot - A0A1L1RKP3
swissprot - A0A1L1RRR6
Ensembl - ENSGALG00000016232
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl8ENSDARG00000014867Danio rerio
 RPL8ENSG00000161016Homo sapiens
 Rpl8ENSMUSG00000003970Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002171  Ribosomal protein L2
 IPR008991  Translation protein SH3-like domain superfamily
 IPR012340  Nucleic acid-binding, OB-fold
 IPR014722  Ribosomal protein L2, domain 2
 IPR014726  Ribosomal protein L2, domain 3
 IPR022666  Ribosomal Proteins L2, RNA binding domain
 IPR022669  Ribosomal protein L2, C-terminal
 IPR022671  Ribosomal protein L2, conserved site
 IPR023672  Ribosomal protein L2, archaeal-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015934 large ribosomal subunit IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 cellular_componentGO:0042788 polysomal ribosome IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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